Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G01_e295_13.seq
(1491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 56 9e-09
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 55 3e-08
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 50 6e-07
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 50 1e-06
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.10
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 32 0.18
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 30 0.94
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 29 2.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 5.0
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 6.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 8.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 8.8
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 56.4 bits (130), Expect = 9e-09
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Frame = +2
Query: 182 TMESLA--QSDLSYSQNN-RPDQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLDRRI 352
T E++A ++D S N D ++S ++ G + + +E+ VEKVL R+
Sbjct: 32 TKEAIASHKADSGSSDNEVESDHESKSSSKKLKENAKEEEGGEEEEEDEYVVEKVLKHRM 91
Query: 353 --KNGKVEYLLKWKGYSN-EDNTWEPE-DNLDCPELISAY 460
K G EYLLKW+GY + DNTW E D C +LI AY
Sbjct: 92 ARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 131
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Frame = +2
Query: 314 EEFSVEKVLDRRIK--NGKVEYLLKWKGYSN-EDNTW-EPEDNLDCPELISAYEEAR 472
EEF+VE +LD R+K +Y LKW+GY + DNTW + ED C ELI AY E+R
Sbjct: 174 EEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAYWESR 230
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 308 KPEEFSVEKVLDRRI-KNGKVE-YLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKR 481
K EE+ VE+++D ++ +NG V+ Y ++W YS+ +TWEP +NL + A + R +R
Sbjct: 4 KQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRR 63
Query: 482 EREATSAS 505
+ + S S
Sbjct: 64 LKGSNSDS 71
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 320 FSVEKVL-DRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL 433
+ VE +L DR KNG EY +KW GY DNTWEPE NL
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 33.1 bits (72), Expect = 0.10
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 314 EEFS-VEKVLDRRIKN-GKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYE-EARLKRE 484
EE+ V++++ + + + G VEYL+KWK + TWE + E I+A E +A +RE
Sbjct: 285 EEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEASSII---EPIAATEIQAFQERE 341
Query: 485 REATSAS 505
A S S
Sbjct: 342 ESALSPS 348
Score = 31.1 bits (67), Expect = 0.41
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Frame = +2
Query: 308 KPEEF-SVEKVLDRRIKNGK--------VEYLLKWKGYSNEDNTWEPEDNL 433
+PE+ +++ VLD R+ G E+L+KW +S+ TWEP +N+
Sbjct: 186 EPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 332 KVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKREREATSASV 508
K++D +K YL+ +KG+ N + W +D I + E LK ++E +A++
Sbjct: 23 KIVDTEMKGDVTTYLIHYKGWKNSWDEWVEQDR------ILQWTEENLKTQKELKNAAI 75
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 314 EEFS-VEKVLDRRI-KNGKVEYLLKWKGYSNEDNTWEPED 427
EE+ VE+++ + GK EY +KW+ ++ TWE D
Sbjct: 301 EEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 368 EYLLKWKGYSNEDNTWEPEDNL 433
+YL+KW+ S+ NTWE L
Sbjct: 231 QYLIKWQEVSHLHNTWEDYSTL 252
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 299 QGGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDN 409
+GG+P+E SV K++ GK+ + + KG S+ ++
Sbjct: 435 KGGEPDEASVAKMVLNDFMRGKIPWFIGPKGLSSSND 471
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 314 EEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL---DCPELISAYEEARLKRE 484
E VE ++ R+ +Y +KW G ++ NTW + L + + A+++ RE
Sbjct: 818 ERRRVEALIGRQKLKKSFQYEIKWFGKPHKYNTWVSREILLENGFQKFVQAFDDMESSRE 877
Query: 485 REATSASVPD 514
+P+
Sbjct: 878 GLGFRELIPE 887
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 233 PDQPMETSQTEVTMQQPGTSGPQGG-KPEEFSVEKVLDRRIKNGKV 367
PDQ E S E+ Q PG+S G K F+ ++V N V
Sbjct: 495 PDQNSEASTIEIVAQAPGSSLTGNGIKQYAFNFDRVFSPETTNEDV 540
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 716 THDQVQRRTLNSLAISQGNTVCHGTIVRPVFSLEVDL 606
TH L ++ISQG+T C +V + + DL
Sbjct: 961 THRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDL 997
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 170 TMDETMESLAQSDLSYSQNNRPDQPMETSQT---EVTMQQPGTSGPQGGKPEEFSVEKV 337
T + ++ QS SY+ NN+ +P+E ++ G S QG K E ++ +
Sbjct: 489 TYNTVKANVPQSSSSYTDNNKQKEPLEEKRSFFPSFRSSLDGVSPTQGRKSGEENIRTI 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,940,731
Number of Sequences: 5004
Number of extensions: 76008
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 832513080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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