BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G01_e295_13.seq
(1491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 42 0.002
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 41 0.003
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 40 0.005
03_01_0227 - 1797353-1798519 36 0.062
12_02_0637 - 21437244-21438080 35 0.14
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 35 0.14
10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834 35 0.14
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 35 0.14
10_02_0198 - 6611775-6612611 35 0.14
08_02_0235 + 14627648-14628889 35 0.14
07_01_1086 - 9930311-9931993 35 0.14
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 35 0.14
09_02_0555 - 10588685-10592038 35 0.19
06_02_0319 + 14306464-14306577,14306623-14307117 35 0.19
03_02_1029 - 13488535-13493037 35 0.19
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454 34 0.25
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 34 0.25
11_03_0201 + 11578163-11578915 33 0.44
10_01_0300 - 3257584-3258825 33 0.44
12_02_0214 + 15750620-15751273 33 0.58
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 33 0.77
08_01_0749 + 7063297-7064370 32 1.0
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 32 1.0
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 32 1.3
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 31 2.3
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 30 4.1
03_06_0232 + 32526411-32526513,32526615-32526716,32528285-325284... 30 4.1
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 30 5.4
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 29 7.1
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 371 YLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLKRE 484
+ ++WKGY E++TWEP +NL DCP I + + +R+
Sbjct: 436 FKVQWKGYGREEDTWEPIENLRDCPLKIKEFVQEGYRRK 474
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 40.7 bits (91), Expect = 0.003
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 353 KNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEE 466
KNG + + ++WKGY +TWEP D L DCPE I + E
Sbjct: 576 KNG-LWFKVRWKGYDPSYDTWEPIDGLSDCPERIKEFVE 613
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 39.9 bits (89), Expect = 0.005
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Frame = +2
Query: 164 NITMDETMESLAQSDL---SYSQNNRPDQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEK 334
N T D+ +E L + + +Y +++R ++ S TE + P S PEEF V K
Sbjct: 884 NETTDDFLELLKEWEKLCKTYVKHSRTKACVD-STTESNNETPDCSTVP---PEEFEVWK 939
Query: 335 VLD------RRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELI 451
++D ++ + + ++WKGY +TWEP + L +C E I
Sbjct: 940 LVDICFGDPNKVSKHGLYFKVRWKGYGPHHDTWEPVEGLRNCKEAI 985
>03_01_0227 - 1797353-1798519
Length = 388
Score = 36.3 bits (80), Expect = 0.062
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 359 GKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEE 466
GK EYL+KW E+ TWEP +N+D EL+ +E+
Sbjct: 337 GKWEYLVKWVDI--EEATWEPAENVDA-ELLQEFEQ 369
>12_02_0637 - 21437244-21438080
Length = 278
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 227 ERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 273
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 530 ERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 576
>10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834
Length = 324
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 273 ERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 319
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 35.1 bits (77), Expect = 0.14
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +2
Query: 236 DQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTW 415
D P+ + E S P+ + + +E + RR++ GK++YL+KW G E W
Sbjct: 80 DSPLVVVEAEAAAPVVDGSPPKLAEGY-YEIEDIRRRRLRKGKLQYLVKW-GSQWEGGAW 137
Query: 416 EPEDNLDCPELISAYEEARLKREREAT 496
+ L PEL K + E T
Sbjct: 138 D----LAAPELSGRIRTEDWKDQEEIT 160
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 386 KGYSNEDNTWEPEDNLD-CPELISAYEEARLKRER 487
+G+ NTWEP +NL C ++I A+ E RL+ R
Sbjct: 218 RGWPESANTWEPLENLSACSDIIDAF-EMRLQSPR 251
>10_02_0198 - 6611775-6612611
Length = 278
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 227 ERRTRNRVIHFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 273
>08_02_0235 + 14627648-14628889
Length = 413
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 362 ERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 408
>07_01_1086 - 9930311-9931993
Length = 560
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 509 ERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 555
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 35.1 bits (77), Expect = 0.14
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 308 KPEEFSVEKVL-DRRIKNGKVEYLLKWKGYSNEDNTWEPEDNLDC-PELISAYEEARLKR 481
+PE +V+++L R+ G+ EY +KWK + ++ TWE + ++ I + E + +R
Sbjct: 147 RPEWTTVDRILATRKSSTGEREYYVKWKELTYDECTWENDSDIAVFQPQIERFNEIQSRR 206
Query: 482 ER 487
++
Sbjct: 207 KK 208
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 34.7 bits (76), Expect = 0.19
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 338 LDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
++RR +N + + ++W ++ E+ TWE ED L P+L ++ E+R
Sbjct: 1065 MERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLFASSSESR 1112
>06_02_0319 + 14306464-14306577,14306623-14307117
Length = 202
Score = 34.7 bits (76), Expect = 0.19
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 338 LDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
++RR +N + + ++W ++ E+ TWE ED L P+L ++ E+R
Sbjct: 150 IERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLFASSSESR 197
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 34.7 bits (76), Expect = 0.19
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 338 LDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
++RR +N + + ++W ++ E+ TWE ED L P+L ++ E+R
Sbjct: 1448 MERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLFASSSESR 1495
>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
Length = 674
Score = 34.3 bits (75), Expect = 0.25
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 338 LDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
++RR +N + + ++W ++ E+ TWE ED L P+L ++ E+R
Sbjct: 622 MERRTRNRVIRFCKVQWSNHAEEEATWEREDELKTAHPDLFASSSESR 669
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 34.3 bits (75), Expect = 0.25
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 KVLDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+V +R +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 1622 EVSERNTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 1671
>11_03_0201 + 11578163-11578915
Length = 250
Score = 33.5 bits (73), Expect = 0.44
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVE-YLLKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N Y ++W +S E+ TWE ED L P L ++ E+R
Sbjct: 199 ERRTRNKVTRFYRVQWSHHSEEEATWEREDELKAAHPHLFASSSESR 245
>10_01_0300 - 3257584-3258825
Length = 413
Score = 33.5 bits (73), Expect = 0.44
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + + ++W +S E++TWE ED L P L ++ E+R
Sbjct: 362 ERRTRNRVICFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESR 408
>12_02_0214 + 15750620-15751273
Length = 217
Score = 33.1 bits (72), Expect = 0.58
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 KVLDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+V +R +N + + ++W +S E+ TWE ED L P L ++ E+R
Sbjct: 163 EVSERNTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHLFASSSESR 212
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 32.7 bits (71), Expect = 0.77
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
+RR +N + ++W +S+E+ TWE ED L P L ++ E+R
Sbjct: 448 ERRTRNKVTSFCRVQWSHHSDEEATWEREDELKAAHPHLFTSSSESR 494
>08_01_0749 + 7063297-7064370
Length = 357
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 KVLDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
KV +R +N + ++W +S E+ TWE ED L P L + E+R
Sbjct: 303 KVSERNTRNRVTRFCKVQWSNHSEEEATWEREDELKSAHPHLFVSSSESR 352
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 32.3 bits (70), Expect = 1.0
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 341 DRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNL 433
+RR +N + + ++W +S E++TWE ED L
Sbjct: 1237 ERRTRNRVIRFCKVQWSNHSEEESTWEREDEL 1268
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 VLDRRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDCPELISAYEEAR 472
V D + +N + +L ++W Y+ ++ TWE ED+L +L S + R
Sbjct: 207 VTDLKTRNQTIRFLKVQWSHYTMDEATWEKEDDLQ-KKLASVFPSPR 252
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 344 RRIKNGKVEYL-LKWKGYSNEDNTWEPEDNLDC--PELISAYEEAR 472
RR +N + + ++W +S E+ TWE ED L P L ++ E++
Sbjct: 523 RRTRNKVIRFCKVQWSHHSEEEATWEREDELKAAHPHLFTSSSESQ 568
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 221 QNNRPDQPMETSQTEVTMQQPGTSGPQ-GGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYS 397
+ N P+ + TEV +Q T + GK +E +++ E+L+KW G S
Sbjct: 446 EKNDTKHPVSKADTEVHTKQEHTPDSKLHGKIQETELKEH-----DGTTYEFLVKWVGKS 500
Query: 398 NEDNTWEPEDNL 433
N N+W E L
Sbjct: 501 NIHNSWISESEL 512
>03_06_0232 +
32526411-32526513,32526615-32526716,32528285-32528442,
32528599-32528706
Length = 156
Score = 30.3 bits (65), Expect = 4.1
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +2
Query: 191 SLAQSDLSYSQNNRPDQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLDRRIKNGKVE 370
S A +D+ Y + R D P++ S E+ + P SG +P F + D+ I GK+
Sbjct: 25 SAAATDVEYCRQGR-DYPVKVSGVEI-VPDPVVSG----QPATFKISASTDKSITKGKLV 78
Query: 371 YLLKWKGYSNEDNTWEPEDNLDCP---ELISAYEE 466
+K+ + + + CP E + A+E+
Sbjct: 79 IDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQ 113
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 29.9 bits (64), Expect = 5.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 368 EYLLKWKGYSNEDNTWEPEDNLD 436
EYL+KW+G ++TWE + +++
Sbjct: 526 EYLVKWQGLPYAESTWEKDTDIE 548
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 648 WNNCPASIFSGSRPLASPRGFSISSIFFFPLRLDLFLKARFSSVIS 511
WN P+S F S L S RG ++S F LRL + +SS+ S
Sbjct: 509 WNFSPSSYFRNSSCLGSSRGLGVNSNF---LRLRRQKNSNYSSMAS 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,088,724
Number of Sequences: 37544
Number of extensions: 483272
Number of successful extensions: 1249
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4768466388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -