Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G01_e295_13.seq
         (1491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)        102   6e-22
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                69   1e-11
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 68   2e-11
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                44   4e-04
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   7e-04
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                40   0.004
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                37   0.048
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   34   0.25 
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   31   1.8  
SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_26603| Best HMM Match : SNF (HMM E-Value=0)                         30   4.1  
SB_4756| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.1  
SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)                   29   7.2  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               29   9.6  
SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score =  102 bits (245), Expect = 6e-22
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
 Frame = +2

Query: 296 PQGGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEAR- 472
           P G   EE+ VEKV+D+R+ NG +EYLLKWKGY + +NTWE E+ L CPELI  YE+ + 
Sbjct: 20  PTGEVEEEYEVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKKK 79

Query: 473 -LKREREATSASVPDITEENLALXXXXXXXXXXXIEEIEKP--RGLARGLLPEKILAGQL 643
              + +++TS       ++               +E+  K     +A G   + IL    
Sbjct: 80  ASSKRKDSTSEKGESKPKKRKVNAYEELGMKAVEVEDASKDDVDPIAEGWEADTILGATE 139

Query: 644 FHGTLYFLVKWQDCSEFDVVLGHELGELYPDFMISYYE 757
             G ++FL++W+     D++        +P  +I +YE
Sbjct: 140 VDGQIHFLIQWKSTDRADLIPSKVANLKWPQIVIKFYE 177


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 29/68 (42%), Positives = 42/68 (61%)
 Frame = +2

Query: 320 FSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKREREATS 499
           ++ E +L  R+++GKV Y +KWKGYS   NTWEPE+N+  P L+ AY+E     E++   
Sbjct: 25  YAAETILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLKAYQERLALSEKKVKR 84

Query: 500 ASVPDITE 523
             V   TE
Sbjct: 85  KKVKPSTE 92


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
 Frame = +2

Query: 311  PEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLKRER 487
            P    VEK+LDRR++ GKVEYL++WKGY   D+TWEP  NL  C ELI  +  +    + 
Sbjct: 902  PSPPKVEKILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELIDNFLNSATSTKS 961

Query: 488  EATSASVPDITEENLALXXXXXXXXXXXIEEIEKPRGL-------ARGLLPEKILAGQLF 646
               S  +     E               +  ++ P  +       + G++P   + G + 
Sbjct: 962  RRRSGIIKAKPVEEFTKLKLPSRRRETKVLHLKTPPPVSPVKVQASTGMIPPPFIKGSII 1021

Query: 647  HGTLYFLVKWQDCSEFDVVLGHELGELYPDFMI 745
              T   L + +D +  D V  H  G L PD  +
Sbjct: 1022 QLTSGELKRVEDLTTDDFV--HSTG-LCPDLKL 1051


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 17/47 (36%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +2

Query: 353 KNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLKRERE 490
           ++G   + ++WKGY+ +D+TWEPE+N+ +C +++  + + R +R RE
Sbjct: 13  QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEFWKRR-RRNRE 58


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 42.7 bits (96), Expect = 7e-04
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +2

Query: 176  DETMESLAQSDLSYSQNNRPDQPMETSQTEVTMQQPGTSGPQGGKPEE-FSVEKVLDRRI 352
            ++ + + + S  S SQ      P ETS+ +       T+  Q    +  F V+K+L+ R 
Sbjct: 921  EDALTNQSTSVPSTSQTTHNRTPDETSENKSKSSLTPTATEQSTDNDGIFIVKKLLNCRR 980

Query: 353  KNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEAR 472
            ++   EYL+ W   S++  TWEP  N+    LI+ Y  +R
Sbjct: 981  RSKTTEYLVLW---SDDSQTWEPRHNILDKRLITHYNHSR 1017


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 SVEKVLDRRI-KNGKVEYLLKWKGYSNEDNTWEPEDNL 433
           ++ +++ RRI ++GK EYL+ WK Y   ++TWEP +NL
Sbjct: 23  AINEIIGRRITQSGKEEYLVHWKKYKVWESTWEPLENL 60


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = +2

Query: 176 DETMESLAQSDLSYSQNNRPDQPMETSQTEVTMQQPGTSGPQGGKPEE-FSVEKVLDRRI 352
           ++ + + + S  S SQ      P ETS+ +       T+  Q    +  F V+K+L+ R 
Sbjct: 352 EDALTNQSTSVPSTSQTTHNRTPDETSENKSKYSLTPTATEQSTDNDGIFIVKKLLNCRR 411

Query: 353 KNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAY 460
           ++   EYL+ W   S++  TWEP  N+    LI+ Y
Sbjct: 412 RSKTTEYLVLW---SDDSQTWEPRHNILDKRLITHY 444


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 36.7 bits (81), Expect = 0.048
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +2

Query: 320 FSVEKVLDRRI--KNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAY 460
           + VE+++ +RI  +NG  EYL+KWK +    +T EP ++L    LI +Y
Sbjct: 41  YDVERIISQRITSRNGDKEYLVKWKNWPIWTSTLEPANHL-TEALIRSY 88


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 34.3 bits (75), Expect = 0.25
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 320  FSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEP 421
            F +++VL    + G+ EY + WKG+ ++ N+W P
Sbjct: 1227 FKIDRVLKTWKRGGRGEYWVHWKGWPDKYNSWVP 1260


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 314  EEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEP 421
            + F ++ V+  R + G+  Y + WKG+ ++  +W P
Sbjct: 1074 QHFKIDSVVKTRKRGGRKVYWVHWKGWPDKYKSWVP 1109


>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 182 TMESLAQSDLSYSQNNRPD--QPMETSQTEVTMQQPGTSGP-QGGKPEE 319
           TME LA  D S   N+R +  + METS  + ++  P   G   GGK  E
Sbjct: 380 TMEDLAMDDTSQIDNSRQEDIEDMETSSIQQSVNLPQEEGVLNGGKKAE 428


>SB_26603| Best HMM Match : SNF (HMM E-Value=0)
          Length = 518

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 242 PMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYS-NEDNTW 415
           P+   +++ T+   G  G     P+EF V +   R     KVEY+L   G++    N W
Sbjct: 4   PLAEDESKATLAVVGDGGSTANPPQEFVVIEDHHREGWGSKVEYILATIGFAIGFGNVW 62


>SB_4756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 308 KPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNE 403
           K + F  +KV+ R  K  K + L+KWKGYS+E
Sbjct: 75  KQDVFRFDKVIRRDYK--KKQALVKWKGYSDE 104


>SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 19/76 (25%), Positives = 40/76 (52%)
 Frame = +2

Query: 236 DQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTW 415
           ++ M  S  E+++     S  +    E +S+ +  +++I   + +YL+KWK +  +  +W
Sbjct: 114 ERSMVRSWAEISVILRPRSSQRTYPSEIYSIWRHSEKKIM--EEQYLIKWKDWPLQFCSW 171

Query: 416 EPEDNLDCPELISAYE 463
           EP  +L   +L+  YE
Sbjct: 172 EPVTHLTA-DLLRYYE 186


>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
          Length = 598

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 686 NSLAISQGNTVCHGTIVR--PVFSLEVDLWLVLEVFQSPQFSF 564
           N L +S G+ +  G+ ++  P+FS+ V LW+ LE  +  Q  F
Sbjct: 244 NCLVLSGGDLLLEGSHIKRKPLFSITVALWVKLETNRGEQTIF 286


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 314 EEFSVEKVLDRRIKNGKVEYLLKWKGY 394
           E + +EK++  R K    EYL+KW+G+
Sbjct: 314 ELYRIEKIVKTRGKGRGREYLVKWRGF 340


>SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 379 QKIFDFSVLNSAI*NFLNRKLFGFTTLGSACAWLLHSHFSLTS 251
           Q +     L S I  + N   FGFT LGS C    H H ++ S
Sbjct: 409 QHVIQLQYLRSLITAYPNTPKFGFTFLGSLC----HQHLNMVS 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,262,308
Number of Sequences: 59808
Number of extensions: 540239
Number of successful extensions: 1641
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4824226347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)