Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G01_e295_13.seq
         (1491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    47   5e-07
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.73 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   3.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 46.8 bits (106), Expect = 5e-07
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 FSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLK 478
           + VE++L ++   G   YL+KWK +  + NTWEP  NL +C +++  +E  RL+
Sbjct: 244 WEVEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEFERNRLQ 297


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 707 GHELGELYPDFMISYYERCAPFSVRHKVA 793
           G  L + YPD+  + YE C+     HK+A
Sbjct: 105 GGRLLQPYPDWSFAKYEDCSGIVSAHKIA 133


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 431 GYLLAPMYCLRWNN 390
           G +    YCLRWNN
Sbjct: 4   GGMAGQHYCLRWNN 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,558
Number of Sequences: 438
Number of extensions: 5325
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52036875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)