Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G01_e295_13.seq
(1491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 53 4e-07
At2g47450.1 68415.m05922 chloroplast signal recognition particle... 41 0.002
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 40 0.006
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 40 0.006
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 40 0.006
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 37 0.030
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 37 0.030
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 30 3.4
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 30 3.4
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 30 4.5
At1g17850.1 68414.m02209 expressed protein 30 4.5
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 29 5.9
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 29 7.9
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 29 7.9
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 53.2 bits (122), Expect = 4e-07
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 320 FSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYE 463
+ +E + +R++ GKV+YL+KW+G+ NTWEP +NL ++I A+E
Sbjct: 108 YEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAFE 156
>At2g47450.1 68415.m05922 chloroplast signal recognition particle
component (CAO) nearly identical to CAO [Arabidopsis
thaliana] GI:4102582
Length = 373
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 317 EFSV-EKVLDRRI-KNGK-VEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKRE 484
E++V E V+ +R+ +GK +EYL+KW S D TWEP+DN+D L+ Y++ + E
Sbjct: 318 EYAVAESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD-STLVLLYQQQQPMNE 373
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 326 VEKVLDRRIKN-GKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKREREATSA 502
V K++ R G +EYL++WK +W P + +++S YE R+A
Sbjct: 86 VNKIIGSRTAGEGAMEYLIEWK--DGHSPSWVPSSYI-AADVVSEYETPWWTAARKADEQ 142
Query: 503 SVPDITEE 526
++ + E+
Sbjct: 143 ALSQLLED 150
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 39.5 bits (88), Expect = 0.006
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 173 MDETMESLAQSDLSYSQNNRPDQPMETSQT-EVTMQQPGTSGPQGGKPEEFSVEKVLDRR 349
MDET ++L +D+SY + PD T Q+ + + G +E +K+ R
Sbjct: 490 MDETSQTLG-NDVSYPSSKSPDLAKSTGQSLSGSTAASEADSSEAGLSKE---QKLKAER 545
Query: 350 IKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKREREATSASVPDITEEN 529
+K K+ ++ K K + EP ++ L S K +E S+S+P + E
Sbjct: 546 LKRAKM-FVAKLKPDAQPVQQAEPSRSISVEPLDSGISGLGAKAAKERDSSSIPYVAESK 604
Query: 530 LA 535
LA
Sbjct: 605 LA 606
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 39.5 bits (88), Expect = 0.006
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 173 MDETMESLAQSDLSYSQNNRPDQPMETSQT-EVTMQQPGTSGPQGGKPEEFSVEKVLDRR 349
MDET ++L +D+SY + PD T Q+ + + G +E +K+ R
Sbjct: 490 MDETSQTLG-NDVSYPSSKSPDLAKSTGQSLSGSTAASEADSSEAGLSKE---QKLKAER 545
Query: 350 IKNGKVEYLLKWKGYSNEDNTWEPEDNLDCPELISAYEEARLKREREATSASVPDITEEN 529
+K K+ ++ K K + EP ++ L S K +E S+S+P + E
Sbjct: 546 LKRAKM-FVAKLKPDAQPVQQAEPSRSISVEPLDSGISGLGAKAAKERDSSSIPYVAESK 604
Query: 530 LA 535
LA
Sbjct: 605 LA 606
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical to
chromomethylase CMT2 [Arabidopsis thaliana] GI:14583094
Length = 1295
Score = 39.5 bits (88), Expect = 0.006
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +2
Query: 215 YSQNNRPDQPMETSQTEVTMQQPGTSGPQGGKPEEFSVEKVLD----RRIKNGK--VEYL 376
++ + R D + T+ T +S EE+ VEK++D K GK +++
Sbjct: 803 FNNDQRTDTLRSVNSTKETSGSSSSSDDDSDS-EEYEVEKLVDICFGDHDKTGKNGLKFK 861
Query: 377 LKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLK 478
+ WKGY ++++TWE + L +C + I + + K
Sbjct: 862 VHWKGYRSDEDTWELAEELSNCQDAIREFVTSGFK 896
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 37.1 bits (82), Expect = 0.030
Identities = 15/42 (35%), Positives = 30/42 (71%)
Frame = +2
Query: 308 KPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL 433
+PE +V+++L R ++G++EYL+K+K S ++ WE E ++
Sbjct: 186 RPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDI 227
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 37.1 bits (82), Expect = 0.030
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 308 KPEEFSVEKVL-----DRRIKNGK-VEYLLKWKGYSNEDNTWEPEDNL-DCPELISAY 460
+P EF VEK L D + K ++ +++WKGY++ +TWEP L +C E + Y
Sbjct: 335 EPGEFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDTWEPYSGLGNCKEKLKEY 392
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 30.3 bits (65), Expect = 3.4
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Frame = +2
Query: 173 MDETMESLAQSDLSYSQNNR--PDQPMETSQTEVTM---------QQPGTSGPQGGKP-E 316
M E E + D+S + +R D+ M+ S+T V++ Q+ G + E
Sbjct: 461 MVEVKEEMLSEDISNATLSRHVDDEDMKVSETHVSVERELLEEAHQETGEKSTVADEEIE 520
Query: 317 EFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL 433
E K D + E+L+KW SN NTW E L
Sbjct: 521 EPVAAKTSDLIGETVSYEFLVKWVDKSNIHNTWISEAEL 559
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 308 KPEEFSVEKVLDRRIKNGKVEYLLKWKGYSNEDNTWEPEDNL-DCPELISAYEEARLKRE 484
+PE +V++++ R + EYL+K+K S ++ WE E ++ D I +++
Sbjct: 138 RPEWKTVDRIIACREGDDGEEYLVKYKELSYRNSYWESESDISDFQNEIQRFKDINSSSR 197
Query: 485 RE 490
R+
Sbjct: 198 RD 199
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +2
Query: 326 VEKVLDRRIKN---GKV--EYLLKWKGYSNEDNTWEPE 424
VE+++ RI G V EYL+KW+G S + TWE +
Sbjct: 535 VERIIADRISKDGLGDVVPEYLVKWQGLSYAEATWEKD 572
>At1g17850.1 68414.m02209 expressed protein
Length = 423
Score = 29.9 bits (64), Expect = 4.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 847 YINTCIHWCEIWCCSRHFGHF 785
Y+ WCEIWC GHF
Sbjct: 188 YVQCLQIWCEIWCYEWDVGHF 208
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 29.5 bits (63), Expect = 5.9
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = +2
Query: 188 ESLAQSDLSYSQNNRPDQPMETSQTEVT----MQQPGTSGPQGGKPEEFSV--EKVLDRR 349
E + +D++++ + +QPMET Q E + ++ G Q EE E+
Sbjct: 205 EQDSNTDVTFTDATKQEQPMETGQGETSETSKNEENGQPEEQNSGNEETGQQNEEKTTAS 264
Query: 350 IKNGKVEYLLK-WKGYSNEDNTWEPEDNLDCPELISAYEEARLKRERE 490
+NGK E +K G E T E E E S E + ER+
Sbjct: 265 EENGKGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQQEERK 312
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 623 KILAGQLFHGTLYFLVKWQDCSEFDVVLGHELGELYPDFMISYYERCAPFS 775
+I AGQ+F G + + KW E L H + YP F + Y C F+
Sbjct: 318 QIAAGQVFPGARHCINKWDVLREGQEKLAH-VCLAYPSFQVELY-NCINFT 366
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 623 KILAGQLFHGTLYFLVKWQDCSEFDVVLGHELGELYPDFMISYYERCAPFS 775
+I AGQ+F G + + KW E L H + YP F + Y C F+
Sbjct: 318 QIAAGQVFPGARHCINKWDVLREGQEKLAH-VCLAYPSFQVELY-NCINFT 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,843,919
Number of Sequences: 28952
Number of extensions: 398499
Number of successful extensions: 1160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3971099904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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