Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F12_e382_12.seq
         (1547 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    75   4e-12
UniRef50_Q8T101 Cluster: Titin-like protein; n=4; Endopterygota|...    47   0.002
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    41   0.076
UniRef50_Q61WJ5 Cluster: Putative uncharacterized protein CBG043...    34   8.7  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 75.4 bits (177), Expect = 4e-12
 Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +3

Query: 420 IRRKTKVXDRA*RINELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDL 599
           IRR+T+V D A RI ++ WQ AG I+R  + R G++VLEW PR GRRSVGRP    TDDL
Sbjct: 405 IRRRTRVTDIARRIAKIKWQWAGHIARRADGRWGRKVLEWRPRAGRRSVGRPPTRWTDDL 464

Query: 600 KXRKSAGCG*RKTGWRGDLWGRPMSSSGRVSV-EWXSF 710
              K AG    +      LW     S G   V +W SF
Sbjct: 465 V--KVAGSTWMQAAQDRSLW----KSLGEAFVQQWTSF 496


>UniRef50_Q8T101 Cluster: Titin-like protein; n=4; Endopterygota|Rep:
            Titin-like protein - Bombyx mori (Silk moth)
          Length = 3354

 Score = 46.8 bits (106), Expect = 0.002
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -1

Query: 683  STAGHRSPPKISTPTGLASSASSGF-PPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGI 507
            STA H+ P  ++T        SS + PP Q+I P+    +    S +  PF+N L P  I
Sbjct: 816  STARHKPPQLLATEHDPRFLPSSSYQPPSQIITPLSLRASCTAFSNSRSPFKNALTPMAI 875

Query: 506  GXAGNXPSPLPHKFIN 459
            G   N  SPLP +  N
Sbjct: 876  GCPANMASPLPPQLTN 891


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 41.1 bits (92), Expect = 0.076
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +3

Query: 420 IRRKTKVXDRA*RINELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDL 599
           IR +TKV D         W  AG ISR  + R    +  W P  G+R+ GR R    D+L
Sbjct: 344 IREQTKVQDILEAEKRRKWNWAGHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRDEL 403

Query: 600 K 602
           +
Sbjct: 404 Q 404


>UniRef50_Q61WJ5 Cluster: Putative uncharacterized protein CBG04380;
            n=1; Caenorhabditis briggsae|Rep: Putative
            uncharacterized protein CBG04380 - Caenorhabditis
            briggsae
          Length = 1427

 Score = 34.3 bits (75), Expect = 8.7
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 686  TSTAGHRSPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGI 507
            +S  G+ S P+ + PT   +  SSG+P      P+  GP   T       F+N  AP   
Sbjct: 963  SSYPGYESGPQ-APPTSQQAPPSSGYPGYSP-SPVQGGPAPPT-------FQNQQAPPPS 1013

Query: 506  GXAGNXPSPLPHKFI-NSSSSVGYFGFSADP 417
            G +G  PSP+  +    ++ S    GF A P
Sbjct: 1014 GYSGYAPSPIQRQQAPPTNPSTPASGFQAPP 1044


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,859,417
Number of Sequences: 1657284
Number of extensions: 20093718
Number of successful extensions: 39917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39833
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 165747864225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)