Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F12_e382_12.seq
         (1547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    31   2.4  
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704...    30   5.7  
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999...    30   5.7  
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672     29   7.5  
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419...    29   7.5  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    29   9.9  

>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
 Frame = -1

Query: 677 AGHRSPPKIST--PTGLASSASSGFPPL----QVIGPIYAGPTYATSSGAW*PFENPLAP 516
           AGH  P + +   P   ASSA+   PP         P Y+   Y+    +   +  P   
Sbjct: 14  AGHYYPHQFAPNPPPHPASSAADAAPPTIPASYASAPPYSVGGYSDQPPSAPSYAPPPQY 73

Query: 515 SGIGXAGNXPSPLPHKFINSSSSVGYFGFSADPPHY*FEPAVKLQA*PSPLPFE 354
           +G     N P+P P+   +S +   Y+ +         + A   +  P+PLP++
Sbjct: 74  AGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAEPSPAPLPYD 127


>08_02_1053 -
           23968372-23968442,23969245-23969294,23970396-23970457,
           23970527-23970709,23970737-23970901,23972235-23972408
          Length = 234

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 668 RSPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW 543
           R   +++ P   +SS   G P L  +   Y GP +AT   AW
Sbjct: 4   RRKREVAPPPHTSSSYPPGVPTLSAVPYPYGGPWFATPPPAW 45


>03_03_0118 +
           14597863-14597929,14598844-14599806,14599909-14599936,
           14600288-14600666
          Length = 478

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = -1

Query: 689 NTSTAGHRSPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSG 510
           NTS  G   P  +S P GL     +  PP     P  AG T    +G + P         
Sbjct: 360 NTSVPGASPPTTLSPPAGLTPPVGTS-PPTD-FSPPAAGTT--PPAGGFTPPAGGFGTPP 415

Query: 509 IGXAGNXPSPL--PHKFINSSSSVG 441
           +G  G  PS    P  F  S SS G
Sbjct: 416 LGGFGTPPSGFGPPGSFNGSGSSFG 440


>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
          Length = 242

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = +3

Query: 474 WQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDLKXRKSAGCG*RKTGWRGD 653
           W+R G   R      G+R   W  R  R    R R  R    + R++ G G R  G  GD
Sbjct: 147 WRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRR--RRRRRTCGGGGR-CGRGGD 203

Query: 654 LWGRP 668
             GRP
Sbjct: 204 ARGRP 208


>02_03_0381 -
           18339290-18339994,18340083-18340103,18341925-18341982,
           18342084-18342220,18342480-18342650
          Length = 363

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
 Frame = -1

Query: 671 HRSPPKISTPTGLASSASSGFP---PLQVIGPI--YAG------PTYATSSGAW*PFENP 525
           H +PP I TP+ L+  +  G P   P+Q   P+  Y G      P ++  SG   P+   
Sbjct: 156 HMAPPPIHTPSRLSHDSPGGSPWRSPMQFQAPMSGYRGPPPGAPPPWSPHSGVPPPWNPH 215

Query: 524 LAPSGIGXAGNXPSPLPHKF 465
            AP   G   + PS  P  +
Sbjct: 216 SAPPSQGLYPHPPSYGPRNY 235


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 662 PPKISTPTGLASSASSGFPPL--QVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNX 489
           PP ++ P    SS+SSG  P    ++  ++A P+ A +      + +P+   G+G  G+ 
Sbjct: 262 PPPVAAPNDCVSSSSSGVAPTSQSLLSSMFAPPSVAQAP----QYADPI---GVGAGGHQ 314

Query: 488 PSPLPHK 468
              +P K
Sbjct: 315 ERAVPAK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,573,241
Number of Sequences: 37544
Number of extensions: 625474
Number of successful extensions: 1263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4988906440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)