Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F12_e382_12.seq
         (1547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               31   1.9  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     31   2.5  
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)                    30   4.3  
SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   10.0 
SB_4403| Best HMM Match : AT_hook (HMM E-Value=3.3)                    29   10.0 

>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 674 GHRSPPKISTPTGLASSAS-SGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIG 504
           G    P + +P    SS + SGF       P+ A P YA S  +W P + P+  +  G
Sbjct: 301 GRPVQPLLMSPQHFISSTTGSGFSRESYPSPVQASPQYAISPYSWSPNDQPMPGNSPG 358


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 686 TSTAGHRSPP-KISTPTGLASSASSGFPPL 600
           TSTA HRSPP K+S     ++SAS   PP+
Sbjct: 787 TSTALHRSPPAKVSPKPSRSASASLKLPPM 816


>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
          Length = 584

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 686 TSTAGHRSPPKISTPTGLASSASSGFPPLQV--IGPIYAGPTYA-TSSGAW*PFENPLAP 516
           + T   RS PK++ PT L + ASS   P+ V     I     Y  +SSG    FEN ++ 
Sbjct: 93  SGTTPPRSTPKMNVPTSLQALASSAANPVIVKSSSTISKPARYLFSSSGLVNSFENHIST 152

Query: 515 SGIGXAGNXPSPLP 474
           +G   +    SP P
Sbjct: 153 NGEETSPVRKSPPP 166


>SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 420 IRRKTKVXDRA*RINELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPR 578
           ++R+T V   +  +    W+  G + R          L W P  GRR  GRP+
Sbjct: 548 VQRRTGVHQLSSEMKRQRWKMIGHVLRQGRENDCSVALTWTPE-GRRKQGRPK 599


>SB_4403| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 280

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 462 NELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDLKXRKSAGC 623
           N L W   G + R  + R  +++L      G R VGRP++   D LK     GC
Sbjct: 195 NRLRW--LGHLCRMDDGRVPKQLLFSELEHGSRPVGRPKLRFKDTLKKDLKIGC 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,433,355
Number of Sequences: 59808
Number of extensions: 630146
Number of successful extensions: 1079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5047244110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)