Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_F12_e382_12.seq
(1547 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 36 0.20
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 36 0.20
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 36 0.20
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 36 0.20
AL031883-2|CAA21410.1| 723|Drosophila melanogaster EG:118B3.1,F... 31 5.6
AE014298-61|AAF45521.1| 723|Drosophila melanogaster CG6172-PA, ... 31 5.6
BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p pro... 30 9.8
AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA... 30 9.8
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 35.5 bits (78), Expect = 0.20
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = -1
Query: 650 STPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSPLPH 471
S+P G + + S P P+YA P YA+++ + P +PS G + P P
Sbjct: 1591 SSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1650
Query: 470 KFINSSSSVGYFGFSADPPHY*FEPA 393
SS S G + P + P+
Sbjct: 1651 VQFQSSPSFAGSGSNIYSPGNAYSPS 1676
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 35.5 bits (78), Expect = 0.20
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = -1
Query: 650 STPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSPLPH 471
S+P G + + S P P+YA P YA+++ + P +PS G + P P
Sbjct: 110 SSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 169
Query: 470 KFINSSSSVGYFGFSADPPHY*FEPA 393
SS S G + P + P+
Sbjct: 170 VQFQSSPSFAGSGSNIYSPGNAYSPS 195
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 35.5 bits (78), Expect = 0.20
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = -1
Query: 650 STPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSPLPH 471
S+P G + + S P P+YA P YA+++ + P +PS G + P P
Sbjct: 1131 SSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1190
Query: 470 KFINSSSSVGYFGFSADPPHY*FEPA 393
SS S G + P + P+
Sbjct: 1191 VQFQSSPSFAGSGSNIYSPGNAYSPS 1216
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 35.5 bits (78), Expect = 0.20
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = -1
Query: 650 STPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSPLPH 471
S+P G + + S P P+YA P YA+++ + P +PS G + P P
Sbjct: 1589 SSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1648
Query: 470 KFINSSSSVGYFGFSADPPHY*FEPA 393
SS S G + P + P+
Sbjct: 1649 VQFQSSPSFAGSGSNIYSPGNAYSPS 1674
>AL031883-2|CAA21410.1| 723|Drosophila melanogaster
EG:118B3.1,FBgn0003986;vnd protein.
Length = 723
Score = 30.7 bits (66), Expect = 5.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 689 NTSTAGHRSPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PF 534
NTS++ +P ++ PTG A A SGFP L + + + A ++ A PF
Sbjct: 106 NTSSSSGLAPEQLRIPTGAA--AFSGFPGLHSMSSLMLPSSAAVAAAAAAPF 155
>AE014298-61|AAF45521.1| 723|Drosophila melanogaster CG6172-PA,
isoform A protein.
Length = 723
Score = 30.7 bits (66), Expect = 5.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 689 NTSTAGHRSPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PF 534
NTS++ +P ++ PTG A A SGFP L + + + A ++ A PF
Sbjct: 106 NTSSSSGLAPEQLRIPTGAA--AFSGFPGLHSMSSLMLPSSAAVAAAAAAPF 155
>BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p
protein.
Length = 328
Score = 29.9 bits (64), Expect = 9.8
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 495 SRXTNARRGQRVL---EWLPRTGRRSVGRPRVNRTDDLKXRKSAGCG*RKTGWRG 650
S+ NARR QRVL E +P +S RP TDD++ K + G +K +G
Sbjct: 182 SKAVNARRNQRVLIGEEGVPEVWGKSPSRP---ETDDVELVKGSYIGPKKKKKKG 233
>AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA
protein.
Length = 463
Score = 29.9 bits (64), Expect = 9.8
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 495 SRXTNARRGQRVL---EWLPRTGRRSVGRPRVNRTDDLKXRKSAGCG*RKTGWRG 650
S+ NARR QRVL E +P +S RP TDD++ K + G +K +G
Sbjct: 164 SKAVNARRNQRVLIGEEGVPEVWGKSPSRP---ETDDVELVKGSYIGPKKKKKKG 215
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,261,354
Number of Sequences: 53049
Number of extensions: 977483
Number of successful extensions: 1946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 8676663912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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