Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F12_e382_12.seq
         (1547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    40   0.006
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    33   0.54 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    32   0.95 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    32   0.95 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    32   0.95 
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    31   2.2  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 420 IRRKTKVXDRA*RINELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDL 599
           +R K+K+ D    I +     AG ++R T+ R    + +W PR  +R VGRP +   D L
Sbjct: 105 VREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSL 164

Query: 600 K 602
           +
Sbjct: 165 R 165


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 420 IRRKTKVXDRA*RINELMWQRAGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDL 599
           IR+ + V D    + +     AG ++R  + R    + EW P   +R VGRP +  TD L
Sbjct: 320 IRKMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 379

Query: 600 K 602
           +
Sbjct: 380 R 380


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 483 AGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDLK 602
           AG ++R  + R    + EW P   +R VGRP +  TD L+
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 854


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 483  AGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDLK 602
            AG ++R  + R    + EW P   +R VGRP +  TD L+
Sbjct: 990  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 1029


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 483 AGXISRXTNARRGQRVLEWLPRTGRRSVGRPRVNRTDDLK 602
           AG ++R  + R    + EW P   +R VGRP +  TD L+
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 768


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = -1

Query: 659 PKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSP 480
           P  ST     S+A++   P    G ++  P  A SSG +   +   AP+  G  G+  +P
Sbjct: 11  PAASTTPLFGSTAAAAPKP----GGLFGAPAAAMSSGLFGASQTAPAPASAGLFGSTTAP 66

Query: 479 LPHKFINSSSSVGYFG 432
            P     S+SSV  FG
Sbjct: 67  TP----ASTSSVPLFG 78


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 647 TPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSP 480
           TPT +A       PP  +  PI  GP+Y++++    P   P  PS I      P P
Sbjct: 435 TPTRVAPPPPPSAPPT-IKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQP 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,167,527
Number of Sequences: 27780
Number of extensions: 495449
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4462926140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)