Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F12_e382_12.seq
         (1547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                35   0.17 
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    33   0.51 
At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid t...    32   0.88 
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    31   2.7  
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica...    29   6.2  

>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 665 SPPKISTPTGLASSASSGFPPLQVI-GPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNX 489
           +PP ++TP   A+ A +  PP  V   P  + P+ A S  +  P  +P AP G G +   
Sbjct: 33  TPPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGPGVSPGE 92

Query: 488 PSPLP 474
            +P P
Sbjct: 93  LAPTP 97


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = -1

Query: 650 STPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSGIGXAGNXPSPLPH 471
           S+P+   +S++SG  P  + G   + P + +SS A     +  A S  G   + PSP   
Sbjct: 253 SSPSFSVASSASGSSP-SIFGATGSSPFFGSSSSAG-STPSLFASSSSGATTSSPSPFGV 310

Query: 470 KFINSSSSVGYFGFSADP 417
              NSSS+      SA P
Sbjct: 311 STFNSSSTSNTSNASASP 328


>At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 200

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 662 PPKISTPTGLASSASSGFPPLQVIGPIYA--GPTYATSSGAW*PFENPLAPSGIGXAGNX 489
           PP++S  +  AS A+ G  P Q   P     GPT  T+     P + P+ P+G+  +   
Sbjct: 127 PPQVSAFSPGASKAA-GTTPTQAPAPDTPADGPTGPTTKSGIRPVDQPMQPTGLAQSSTS 185

Query: 488 PSPLPHKFIN 459
           P  LP  FI+
Sbjct: 186 PF-LPLLFIS 194


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 665 SPPKISTPTGLASSASSGFPPLQVIGPIYAGPT-YATSSGAW*PFENPLAPSGI 507
           S P  STPTG   S SSGF P  V  P  A P+   T + A+     P  P  I
Sbjct: 225 SEPGPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTPTSAYWCVAKPSVPDPI 278


>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
           to gi_3883126_gb_AAC77826
          Length = 135

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 665 SPPKISTPTGLASSASSGFPPLQVIGPIYAGPTYATSSGAW*PFENPLAPSG 510
           +PP ++TP   A+ A +  PP     P    P+ A S  A  P  +P AP G
Sbjct: 42  TPPPVATPPPAATPAPATPPPAATPAPATTPPSVAPSP-ADVPTASPPAPEG 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,948,205
Number of Sequences: 28952
Number of extensions: 457566
Number of successful extensions: 804
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4154233152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)