Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F11_e374_11.seq
         (1533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.9  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   9.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   9.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 1244 PPPXXPXNPPXPPPXPPXKXP 1306
            PPP  P  P  PP  PP   P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 195 VCCTFQENNDIKLSKHILKINKKYLP 118
           +C +F E+N I  SK++  ++K Y P
Sbjct: 88  ICQSFDESNIITPSKYLFPLSKDYSP 113


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 1241 KPPPXXPXNPPXPPPXPPXKXP 1306
            +PP   P  P  PPP P    P
Sbjct: 138  RPPTSAPPRPSIPPPSPASAPP 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,581
Number of Sequences: 5004
Number of extensions: 77676
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 860263516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)