Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F10_e366_12.seq
         (1557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1788 + 29523216-29524867,29525048-29525075                       31   2.5  
05_07_0357 - 29533496-29533556,29533638-29533770,29533857-295339...    31   2.5  
01_06_1311 - 36181961-36182519,36182547-36182605                       31   2.5  
03_05_1100 - 30404224-30405018,30405100-30405435                       30   4.3  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    30   5.7  
11_06_0710 - 26492093-26493460                                         29   7.5  

>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 114 FEFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAA 245
           F+ N  +D  + A  K+GRGRP+ N              PP+ A
Sbjct: 5   FDLNSAADPQTLAPPKRGRGRPRKNPPPPPPPATDPNPHPPSGA 48


>05_07_0357 -
           29533496-29533556,29533638-29533770,29533857-29533953,
           29534073-29534141,29534221-29534378,29534483-29534527,
           29534598-29534625
          Length = 196

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 156 EKKGRGRPKANG-TQSETKEVKKRGRPPAAAPKTKESAKSSDDE 284
           E+K    P+ANG  + +  E KK+G+  ++A K+K +    DD+
Sbjct: 14  EEKIIPAPRANGKVEGKENEQKKQGKTDSSASKSKAAVNDDDDD 57


>01_06_1311 - 36181961-36182519,36182547-36182605
          Length = 205

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 108 ALFEFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDD 281
           A F      DDG  A   +    P+ +GT  +  E+++RG    AAP+   + +S DD
Sbjct: 104 AAFSPTTSEDDGDGAGRLRPEW-PQDDGTSCDVAELRRRGDAEHAAPRRVATDRSCDD 160


>03_05_1100 - 30404224-30405018,30405100-30405435
          Length = 376

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 189 GTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQAP 293
           G +   K +K+R  PP++ P +  S+ SS  +Q P
Sbjct: 132 GKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQP 166


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +3

Query: 117 EFNKMSDDGSTAVEKKGRGRPKA----NGTQSETKEVKKRGRPPAAAPKTKESAKSSDDE 284
           E +   D+ S  +  K + +PK     N     T     RG PPA+  K K  +   DD 
Sbjct: 361 EDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGGDDS 420

Query: 285 QA 290
           +A
Sbjct: 421 KA 422


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 123 NKMSDDGSTAVEKKGRGRPK-ANGTQSETKEVKKRGRPP--AAAPKTKESAKSSDDE 284
           +K SDD     EKK + + K ++  + + K+ KK+ + P      K K   KSSD++
Sbjct: 146 SKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKKSSDED 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,313,874
Number of Sequences: 37544
Number of extensions: 439736
Number of successful extensions: 1212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)