Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F10_e366_12.seq
         (1557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                30   4.4  
SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)              29   7.6  

>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 EKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQA 290
           ++  R R K+  T ++  + K+  RP  A+ KTK S     D+QA
Sbjct: 664 KQAARPRQKSRKTNTKKPQDKQAARPRQASRKTKTSKPQDQDKQA 708



 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 159 KKGRGRPKANGTQSETKEVKKRG----RPPAAAPKTKESAKSSDDEQA 290
           +K + RP+    +S+  + K +G    RP  A+ KTK S     D+QA
Sbjct: 203 RKSKARPRQASRKSKASKSKDQGKQGARPRQASSKTKTSKPEDQDKQA 250


>SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)
          Length = 488

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 117 EFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQA 290
           E  K S    T+ + K + + K +  Q + K+ K+  RP  A+ KTK S     D+QA
Sbjct: 121 EARKASRKTKTSKKSKPQDQDKQD-KQDQDKQDKQAARPRQASCKTKTSKLHDQDKQA 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,201,878
Number of Sequences: 59808
Number of extensions: 482299
Number of successful extensions: 1163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)