Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F10_e366_12.seq
         (1557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    33   0.55 
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    33   0.55 
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    32   0.96 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    32   1.3  
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    30   3.9  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    30   5.1  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    30   5.1  
AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical ...    30   5.1  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    30   5.1  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    30   5.1  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical ...    29   6.7  
AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility...    29   6.7  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   8.9  

>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical protein
            F56C9.10b protein.
          Length = 1031

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 138  DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQ 287
            + ST   + G G   + G     K +KK+  PPA+AP    S KSS  ++
Sbjct: 960  ESSTPFARNGSGSSSSTGATGG-KSLKKKKTPPASAPLPTSSTKSSQKDK 1008


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical protein
            F56C9.10a protein.
          Length = 1028

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 138  DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQ 287
            + ST   + G G   + G     K +KK+  PPA+AP    S KSS  ++
Sbjct: 957  ESSTPFARNGSGSSSSTGATGG-KSLKKKKTPPASAPLPTSSTKSSQKDK 1005


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 117 EFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPK----TKESAKSSDDE 284
           E  K S   S   +K+     +A+ ++ E  EVKK  + P   PK     +ES +SS DE
Sbjct: 314 EEEKSSKKRSKKSKKESDEEQQASDSEEEVVEVKKNSKSPKKTPKKTAVKEESEESSGDE 373

Query: 285 QAPV 296
           +  V
Sbjct: 374 EEEV 377


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 138 DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQ 287
           +  +A  K+GRGRP++  T S T++  +      AA ++K +    ++EQ
Sbjct: 565 EAPSAPVKRGRGRPRSRSTMSITED-SEPSTSSTAAKRSKRAESDEEEEQ 613


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 153 VEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESA--KSSDDE 284
           ++ K RG+ K    + +TK +K+    P  APK  E+   +S+DDE
Sbjct: 308 IQAKNRGKSKDKLKEEKTKSLKEEKDIPGPAPKPLETVFYESTDDE 353


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
 Frame = +3

Query: 159 KKGRGRPKANGTQSETK--------EVKKRGRPPAAAPKTKESA 266
           K+GRGRP+   ++ + +        E KKRGRP  AA  ++E A
Sbjct: 95  KRGRGRPRKQSSEEKVQIPKVVVKFEPKKRGRPAGAAKWSQEVA 138


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical protein
            ZK524.4 protein.
          Length = 1016

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +3

Query: 78   VTFCCERCYFALFEFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTK 257
            +T    +C     E NK  DD        G+     +GT S T   K+       AP++ 
Sbjct: 799  LTMLSSKCASKFDEKNKKDDDDEANGGTTGKRGNSGSGTTSLTVTGKQSNNQSGIAPQSN 858

Query: 258  ESAKSSDDEQAPV 296
            E   + +D   P+
Sbjct: 859  EKRSTLNDSVLPL 871


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical protein
            ZK524.4 protein.
          Length = 1016

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +3

Query: 78   VTFCCERCYFALFEFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTK 257
            +T    +C     E NK  DD        G+     +GT S T   K+       AP++ 
Sbjct: 799  LTMLSSKCASKFDEKNKKDDDDEANGGTTGKRGNSGSGTTSLTVTGKQSNNQSGIAPQSN 858

Query: 258  ESAKSSDDEQAPV 296
            E   + +D   P+
Sbjct: 859  EKRSTLNDSVLPL 871


>AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical
           protein Y9D1A.1 protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 120 FNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKT 254
           +NK  ++GS   ++ GR  P+ +G +   +    RG P  +  KT
Sbjct: 242 YNKDDEEGSGRKDRAGRVGPEGSGRKDRDETTMVRGSPETSTIKT 286


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 708 VKCIMTIHKFLHEYF*MDNLI*EFC 634
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 708 VKCIMTIHKFLHEYF*MDNLI*EFC 634
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 138 DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQAPV 296
           D +  ++K+      +N   S+   V     PPAA  K KES + + +E   V
Sbjct: 640 DSNDKIDKEPNASSTSNDETSKDDTVPMESDPPAATEKPKESTEITTEEPLEV 692


>AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical
           protein Y17G7A.1 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 129 MSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQAPV 296
           ++D GS+ V KKGRGRP  N +      + K+GR   A     ++  + D   +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADT-DAIDTASSPV 164


>AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility
           group protein I beta protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 129 MSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQAPV 296
           ++D GS+ V KKGRGRP  N +      + K+GR   A     ++  + D   +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADT-DAIDTASSPV 164


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 159 KKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQAP 293
           KK      ++  ++  K+   +  P   A K + S+ SSDDE+ P
Sbjct: 278 KKADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKKP 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,715,978
Number of Sequences: 27780
Number of extensions: 393658
Number of successful extensions: 1189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)