Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F10_e366_12.seq
         (1557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    29   6.3  
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa...    29   8.3  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    29   8.3  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 135 DDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDE 284
           +D   AV+KK   + K + ++   K  K+    PA+A KTK++   SD +
Sbjct: 273 EDKEVAVKKKMAEKRKLSKSEGTGKR-KREKEKPASAKKTKQTDSQSDSD 321


>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to RING-H2 zinc
           finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 289

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 469 QKTNKMFPNRTFT*CNLFVMITLSVYVTIIYSFY-LHYCKCWYY 597
           Q T   +P + ++   L +++T+ + V     F+ +++CKC+Y+
Sbjct: 9   QNTTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYH 52


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 144 STAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQ 287
           ST   K  RG  K+ G +S  K+ +   +P   +    ES+ SSDDE+
Sbjct: 268 STTRHKGRRGERKSKG-RSGKKKARPDRKPSTNSSSDTESSSSSDDEK 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,057,667
Number of Sequences: 28952
Number of extensions: 345912
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)