Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F08_e350_12.seq
         (1524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    28   3.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   3.9  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    28   3.9  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   6.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   9.0  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 476 WTLVKPFGHTQSSPALS*RTRFNDDFQITL 387
           W  ++PF   QSS A +  T  N DF++ L
Sbjct: 479 WNFIEPFKRPQSSSAPTILTDINGDFEMAL 508


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 321 LKSSYRDNNFQFHN*VLSCLSKTSI*VKFTNINESHNPCKFFAFHTAHYLGTNI 160
           L S+Y+D +      +LSCLS+  I +KF    +   P  F ++   H  G+N+
Sbjct: 276 LMSAYQDPSVSKPQEILSCLSQ--IPIKFIFFYQDVRPPYFGSYTKTHSHGSNV 327


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 534 YVNHKFNQDIVNGNRNDRQLTAHDN 608
           Y+ HK N D+ NG R   +L  +D+
Sbjct: 398 YIAHKMNTDVYNGKRTKVRLEMYDD 422


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +3

Query: 498 LWTRRHRNFWYEYV-NHKFNQDIVNGNRNDRQLTAHDNGQVTKGNKEKGSLIAAVIDQTD 674
           LW  +   +W  +  +H FN   V  N N        N    K N EK + I    + T 
Sbjct: 21  LWFPQPLKYWPAFQQSHTFNSMSVFKNDNAIANQTTVNESDVKRNVEKINDIYECSNNTK 80

Query: 675 TPVFINEDEEVRKNVW 722
           +P F N D  +    W
Sbjct: 81  SPCFPNSDSRIPLVNW 96


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 GLTRVQVKRLRTLFGHDVTETFGMNMSIINS 552
           GLT  + K L T F H   +  G+N S+ N+
Sbjct: 407 GLTNYRTKPLTTGFNHPRPQGHGLNTSLFNT 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,910,372
Number of Sequences: 5004
Number of extensions: 63726
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)