Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F08_e350_12.seq
         (1524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323...    29   9.7  

>12_01_0410 -
           3234836-3234958,3235636-3235776,3235899-3235949,
           3236045-3236125,3236427-3236483,3236898-3236993,
           3237204-3237379,3237630-3237703,3237909-3238016,
           3238100-3238236,3238396-3238446,3239032-3239142,
           3239291-3239363,3240322-3240398,3240641-3240706,
           3241349-3241463,3242255-3242511
          Length = 597

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 672 DTPVFINEDEEVRKNVWSDIDDELYITNLIKERTSNVERY 791
           D  V I   E + KNVW++   E+YI   ++   +NV R+
Sbjct: 305 DVAVKILRSEHLNKNVWNEFTQEVYILREVQH--TNVVRF 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,101,188
Number of Sequences: 37544
Number of extensions: 436381
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)