Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F08_e350_12.seq
         (1524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           31   2.4  
SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)                   29   7.4  

>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 567 NGNRNDRQLTAHDNGQVTKGN-KEKG--SLIAAVIDQTDTPVFINEDEEVRKN 716
           N +R+D++ T  D+ +   G  KEKG  S++++ +D   + V  + DEE RK+
Sbjct: 114 NPDRDDKEETGVDDERSLDGEQKEKGMGSIVSSTLDDMGSSVAKDSDEEKRKS 166


>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 695 FINEYRSICLIYNSRY-KTTFFLISFCDLSIIMCCELSIISVTVYDVLI 552
           F+ E  SI  +Y   Y +     +S C LSII+ C ++ +SV +  ++I
Sbjct: 11  FLGEPGSITCLYLIHYHRCRLTNVSVCILSIIIVCRITKVSVCILSIII 59



 Score = 30.3 bits (65), Expect = 4.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 629 ISFCDLSIIMCCELSIISVTVYDVLIEFMI 540
           +S C LSII+ C L+ +SV +  ++I F +
Sbjct: 272 VSVCILSIIIVCRLTNVSVCILSIIIVFRL 301



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 629 ISFCDLSIIMCCELSIISVTVYDVLI 552
           +S C LSII+ C L+ +SV++  ++I
Sbjct: 66  VSVCILSIIIVCRLTKVSVSILSIII 91



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 629 ISFCDLSIIMCCELSIISVTVYDVLI 552
           +S C LSII+ C L+ +SV +  ++I
Sbjct: 192 VSVCTLSIIIVCRLTKVSVCILSIII 217


>SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)
          Length = 301

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 543 HKFNQDIVNGNRNDRQLTAHDNGQVTKGNKEKG 641
           HK      NG   D+Q  A +NG  T+  K++G
Sbjct: 218 HKLYVSDNNGRNTDKQYAAQENGSTTEREKKRG 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,460,554
Number of Sequences: 59808
Number of extensions: 498324
Number of successful extensions: 1155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4953341894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)