Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F08_e350_12.seq
         (1524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    30   4.6  
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode...    29   8.1  

>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 555 QDIVNGNRNDRQLTAHDNGQVTKGNKEKGSLIAAVIDQTDTPV 683
           Q + NGN N  Q+   D+ +  +GNK+ G  +    ++ +T V
Sbjct: 860 QPVANGNTNGLQMDGSDDKKSKEGNKKGGKSVLIKQEERETGV 902


>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
           protodermal factor 2 (PDF2) identical to GP|14276060|
           protodermal factor2 (GI:14276060)
          Length = 743

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 243 LKLKFWTSN*VLNCETESYYHDNLILKCKKVLLFV*GN-FKSTINNLKC 386
           L++KFW  N     + +S  H+N ILK     L    N +K  ++N  C
Sbjct: 104 LQVKFWFQNKRTQMKAQSERHENQILKSDNDKLRAENNRYKEALSNATC 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,040
Number of Sequences: 28952
Number of extensions: 350762
Number of successful extensions: 878
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)