Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F07_e342_11.seq
         (1494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   3.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   6.7  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    27   6.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    27   8.8  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 428  IIAQNY-SYVRILKSFANHKLALGDHWLGTIGLYCFSVVN*FNYLEPTVKSGRGFYLNSI 604
            II  NY + VR  K      L L D  +    LY    +   NY+   V+  +GF + S+
Sbjct: 1162 IIETNYENLVRQTKLIGRAALELRDSKVFKGLLYLILYLG--NYMNDYVRQAKGFAIGSL 1219

Query: 605  TRLAYDSLKKNSEIILNPLSI 667
             RL       N++ +L+ L I
Sbjct: 1220 QRLPLIKNANNTKSLLHILDI 1240


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 566 TVKSGRGFYLNSITRLAYDSLKKNSEIILNPL 661
           T K G  + L+SI R   D  KKN+E   NP+
Sbjct: 57  THKLGALYILDSIVRSFQDGAKKNNESFENPV 88


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 120 DIYRPRYLLNMYFHNVIFSLKGTSIY*KIKSLPIIDGELKSSRLSKSVVFNLFFTRDHHI 299
           D+    + L M F  + F L       K+K +PI+ G L S+ +  +  F   + +D   
Sbjct: 123 DVDESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESN 182

Query: 300 DFFVN 314
            F ++
Sbjct: 183 SFVIS 187


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 451 VGVILCYNNSPRIIELMRRCKHKKHINLF*HSSQLS 344
           VG I C+ +S  I  ++  C+HK  + L     QL+
Sbjct: 101 VGFIDCFEDSTNIYLILELCEHKSLMELLRKRKQLT 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,874,314
Number of Sequences: 5004
Number of extensions: 92157
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)