Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F07_e342_11.seq
         (1494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 693 IGFLLXFYWFIFMGTRHIKVAAIFINY 773
           I FL  FY FIF+ + H  +  +F+NY
Sbjct: 45  IEFLYLFYLFIFIRSMHFNLTFLFMNY 71


>Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical protein
            W03G11.1b protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = +1

Query: 1249 GLQGGGXXXPXPXLTPXXKFXXSPFGPRPXGGXXETXGXXGXPXVGXXKQTPPRPXFGKF 1428
            G QGG    P P   P       P GP    G     G  G P  G   +  P    GK 
Sbjct: 192  GPQGGSNVAPSPAGEPGAPGAQGPKGPPGAAGRPGRDGQPGAP--GDQGENGPDGAPGKS 249

Query: 1429 XXXSXPXXP 1455
                 P  P
Sbjct: 250  GSDGQPGAP 258


>Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical protein
            W03G11.1a protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = +1

Query: 1249 GLQGGGXXXPXPXLTPXXKFXXSPFGPRPXGGXXETXGXXGXPXVGXXKQTPPRPXFGKF 1428
            G QGG    P P   P       P GP    G     G  G P  G   +  P    GK 
Sbjct: 245  GPQGGSNVAPSPAGEPGAPGAQGPKGPPGAAGRPGRDGQPGAP--GDQGENGPDGAPGKS 302

Query: 1429 XXXSXPXXP 1455
                 P  P
Sbjct: 303  GSDGQPGAP 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,173,528
Number of Sequences: 27780
Number of extensions: 529034
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)