Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F07_e342_11.seq
         (1494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 349 LSFLVYRSSCYQLTKKSMWWSLVKKRLKTTDLDNR 245
           L+FLVY S+  +L   S+W  L    L    LD++
Sbjct: 358 LAFLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQ 392


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 349 LSFLVYRSSCYQLTKKSMWWSLVKKRLKTTDLDNR 245
           L+FLVY S+  +L   S+W  L    L    LD++
Sbjct: 411 LAFLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQ 445


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 527 NIDRWFPTSGPQEPIYGSRKISEFVRRSN 441
           NI+R+F +  P   +YGS +  E +  SN
Sbjct: 550 NIERFFKSKPPVATMYGSDE--EIINSSN 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,785
Number of Sequences: 438
Number of extensions: 7994
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52156500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)