Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F06_e334_12.seq
         (1590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     32   1.4  
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    31   1.9  
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     30   5.8  
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074...    29   7.7  
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968...    29   7.7  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -3

Query: 421 CSGSSEGGKLSASKKLAWSATTVTVAPKTQNNTAPAP-------ASQQIPIEPAAATAYC 263
           C   S GG  S S+ L  + TT+     T  ++ P P       A  Q  +  ++++A  
Sbjct: 166 CKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPLPPLMDTTLAQLQASMNTSSSSAIA 225

Query: 262 CVLVSSQLPIFQVFGPEV 209
            V    Q+P F  F   +
Sbjct: 226 AVAALEQVPCFSSFSNSI 243


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 571 KMEEFQCDVKMAAKLSWTKPFLSVHDR---TDYTCNR*FKLKEYI 696
           K+E FQCD++       TK  L  H R   TD +C + F   +Y+
Sbjct: 790 KVEAFQCDIEFCDMTFETKAELRAHQRNICTDESCGKRFSSHKYL 834


>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 269 CCRGCWFYGYLLACRSWSCVVLGFRCNS 352
           C  G +F  +L +C++WSC V   + +S
Sbjct: 86  CLLGQYFANFLFSCKTWSCAVCEVQTSS 113


>04_03_1026 -
           21806124-21806225,21807017-21807055,21807307-21807407,
           21807924-21808185,21808334-21808458,21809058-21809637
          Length = 402

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 448 CHTCSIMGNCSGSSEGGKLSASK 380
           C +CS   NC+GSS+ G+L  ++
Sbjct: 372 CLSCSYTSNCTGSSQAGELKKAR 394


>03_02_0592 -
           9687700-9687933,9688515-9688591,9688891-9688999,
           9689162-9689260,9689368-9689454,9689570-9689630,
           9689739-9689813,9689936-9689961
          Length = 255

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 500 VDLQ*TPRWRHEQ--RQGTVSHLFHHGKLL 417
           +DLQ  P W  E+   QGTV  L H+GK++
Sbjct: 65  IDLQDKPAWYKEKVYEQGTVPSLEHNGKIM 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,701,592
Number of Sequences: 37544
Number of extensions: 597342
Number of successful extensions: 1637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5151335952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)