Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F06_e334_12.seq
         (1590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.               92   6e-18
CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.               92   6e-18
BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1 (prenyla...    92   6e-18
BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.       92   6e-18
AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor...    92   6e-18
AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor...    92   6e-18
AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor...    91   8e-18

>CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


>CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


>BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1
           (prenylated) protein.
          Length = 185

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


>BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.
          Length = 185

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


>AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor 1
           protein.
          Length = 184

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 72  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 130

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 131 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 174


>AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor 1
           protein.
          Length = 185

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPAHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


>AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor 1
           (PRA1) protein.
          Length = 185

 Score = 91.5 bits (217), Expect = 8e-18
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 96  YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFG---YRKLTSGPNTWKIGSWELTKTQQ 266
           Y+Q+NY+ VFLGL  YC++TSP+LL+A+ A FFG      L +  +   +   E++   Q
Sbjct: 73  YYQSNYVFVFLGLILYCVVTSPMLLVAL-AVFFGACYILYLRTLESKLVLFGREVSPEHQ 131

Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
           YA+A   S    WLAGAG+ +FWVLGAT+ V+  HA+F   E++
Sbjct: 132 YALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,708,842
Number of Sequences: 237096
Number of extensions: 3259295
Number of successful extensions: 7444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7434
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23738836530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)