Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F06_e334_12.seq
         (1590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical ...    32   0.98 
Z81045-5|CAB02815.1|  322|Caenorhabditis elegans Hypothetical pr...    29   9.1  

>AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.9 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.98
 Identities = 25/67 (37%), Positives = 32/67 (47%)
 Frame = -3

Query: 436 SIMGNCSGSSEGGKLSASKKLAWSATTVTVAPKTQNNTAPAPASQQIPIEPAAATAYCCV 257
           SI+G  + S      +A KK   S  T T AP+T   +APAPA +  P    AA A   V
Sbjct: 55  SILGGWTTSDGVSVTAAKKKKNKSKKTETAAPET-TQSAPAPA-KAAPAPTVAAPASSSV 112

Query: 256 LVSSQLP 236
             S+  P
Sbjct: 113 TKSAAAP 119


>Z81045-5|CAB02815.1|  322|Caenorhabditis elegans Hypothetical
           protein C36F7.5 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 448 CHTCSIMGNCSGSSEGG-KLSASKKLAWSATTVTVAPKTQNNTAPAPASQQIPIEPAAAT 272
           C T  ++  C    +GG KL  S+    S  T       +  ++P PAS+  P  PAA  
Sbjct: 16  CATIQVLFLCGKKKKGGSKLENSEASTKSGKT---GKSDKGESSPTPASKDAPPAPAAPN 72

Query: 271 A 269
           A
Sbjct: 73  A 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,599,828
Number of Sequences: 27780
Number of extensions: 507824
Number of successful extensions: 1421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4608230712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)