Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F06_e334_12.seq
         (1590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.45 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 681 TEGVYYIRLYMDSYTILGFSVQILRIFKGI 770
           TEG  Y+   +DSY + GF +  L  F+ I
Sbjct: 435 TEGGMYVFQLLDSYAVSGFCLLFLMFFECI 464


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 681 TEGVYYIRLYMDSYTILGFSVQILRIFKGI 770
           TEG  Y+   +DSY + GF +  L  F+ I
Sbjct: 488 TEGGMYVFQLLDSYAVSGFCLLFLMFFECI 517


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 402 PSDDPEQFPMMEQV*HSPLPLFMPPPG 482
           P   P Q P   Q    P P   PPPG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 453 DCVTLVPSWETAQDHQRVANFLHRRNL 373
           +C+T +PS    + H R  NF   R L
Sbjct: 298 NCLTRIPSTRINKQHTRGNNFSLSRKL 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,340
Number of Sequences: 438
Number of extensions: 6090
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55984500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)