Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_F06_e334_12.seq
(1590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family p... 38 0.018
At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family p... 31 1.6
At1g12060.1 68414.m01392 IQ domain-containing protein / BAG doma... 31 2.1
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 30 3.7
At3g52840.1 68416.m05823 beta-galactosidase, putative / lactase,... 30 4.9
At2g38360.1 68415.m04712 prenylated rab acceptor (PRA1) family p... 30 4.9
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 29 6.4
At1g08770.1 68414.m00976 prenylated rab acceptor (PRA1) family p... 29 6.4
At3g09990.1 68416.m01199 equilibrative nucleoside transporter, p... 29 8.5
>At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 216
Score = 37.9 bits (84), Expect = 0.018
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +3
Query: 96 YFQANYLMVFLGLFAYCLITSP---LLLIAMVASFFGYRKLTSGPNTWKIGSWELTKTQQ 266
YF+ANY+ + L A L+T P LL ++ AS+ IG + +
Sbjct: 75 YFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLET 134
Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
+ ++ + ++ G++L L + VA+H +F E L
Sbjct: 135 LGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDL 178
>At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 209
Score = 31.5 bits (68), Expect = 1.6
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 96 YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFGYRKL-TSGPNTWKIGSWELTKTQQYA 272
YF+ NY+ + + A+ L + PL L+ ++ G+ L P+ + + T + +
Sbjct: 75 YFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRET 134
Query: 273 VAA--AGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
+ A ++ + ++ G++L L V +V +H +F + L
Sbjct: 135 LLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDL 178
>At1g12060.1 68414.m01392 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles
PF00612: IQ calmodulin-binding motif, PF02179: BAG
(Apoptosis regulator Bcl-2 protein) domain
Length = 215
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 394 LSASKKLAWSATTVTVAPKTQNNTAPAPASQQIPIE-PAAAT 272
+ S+K + S TT TV N+ PA+++IPIE P AT
Sbjct: 1 MKRSRKFSSSTTTTTVIHTFYNDHTTPPATKEIPIETPLPAT 42
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 30.3 bits (65), Expect = 3.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 466 NNGKGLCHTCSIMGNCSGSSEGGKLSASKKLAWSATTVTVAPKTQNNTAP-APAS 305
+NG +C+ C S G L K+ W+A TVAP T AP PA+
Sbjct: 407 HNGDHVCNICH-----KSFSTGQALGGHKRCHWTAPVSTVAPTTVPTAAPTVPAT 456
>At3g52840.1 68416.m05823 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 727
Score = 29.9 bits (64), Expect = 4.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +3
Query: 216 GPNTWK---IGSWELTKTQ-QYAVAAAG-SMGICWLAGAGAVLFWVLGATV 353
GP T K G+W+++K + Y + G +M + LAG+ AV +W+ G V
Sbjct: 563 GPVTLKGVNSGTWDMSKWKWSYKIGLRGEAMSLHTLAGSSAVKWWIKGFVV 613
>At2g38360.1 68415.m04712 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 220
Score = 29.9 bits (64), Expect = 4.9
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 96 YFQANYLMVFLGLFAYCLITSP---LLLIAMVASFFGYRKLTSGPNTWKIGSWELTKTQQ 266
YF+ NYL V + + L+T P + L+ ++AS+ + + +
Sbjct: 85 YFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRET 144
Query: 267 YAVAAAGSMGICWLAGAGAVLFWVLGATVTVVALHASFFDAESL 398
S+ + +L G+VL + V ++ H +F E L
Sbjct: 145 LGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDL 188
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 29.5 bits (63), Expect = 6.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 389 CIEETCVECYHSYCCT*NPKQHSSSSC 309
C+++TCV+C +C HS SC
Sbjct: 226 CVKQTCVKCNGLFCIDCKVPSHSDLSC 252
>At1g08770.1 68414.m00976 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 209
Score = 29.5 bits (63), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 96 YFQANYLMVFLGLFAYCLITSPLLLIAMVASFFGY 200
YF+ NY + L + LI P+ +IA + F G+
Sbjct: 78 YFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGW 112
>At3g09990.1 68416.m01199 equilibrative nucleoside transporter,
putative (ENT2) identical to putative equilibrative
nucleoside transporter ENT2 [Arabidopsis thaliana]
GI:16518991; contains similarity to SWISS-PROT:Q14542
equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter, Equilibrative NBMPR-insensitive
nucleoside transporter, Nucleoside transporter, ei-type,
36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
protein, 36 kDa, Delayed-early response protein 12)
[Homo sapiens]; contains Pfam profile PF01733:
Nucleoside transporter
Length = 417
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 288 SMGICWLAGAGAVLFWVLGATVTVVALHASFF 383
++ +CWL G G +L W + +T+V +A F
Sbjct: 18 ALAVCWLLGVGCLLAW--NSMLTIVDYYAYLF 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,035,190
Number of Sequences: 28952
Number of extensions: 464063
Number of successful extensions: 1181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4289173440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -