Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F05_e326_11.seq
         (1607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   3.1  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   4.2  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 273 LLYVVLATACYEIQSATLRFIPSRMGDANEVDEPEMR-SPAELVRARVG 416
           LL ++L  A  E+Q+A +   PS+    N +   ++R SP  ++R   G
Sbjct: 610 LLLLILFDAAKELQNALVPLSPSQPHSGNNIFADQVRQSPTSMIRTASG 658


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 475 TGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSST 362
           + P GG +   A S   TP+P+R+  ++AG R + ++T
Sbjct: 131 SSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATT 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,152,247
Number of Sequences: 5004
Number of extensions: 76194
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 909817866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)