Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_F05_e326_11.seq
(1607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 34 0.36
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072 31 2.6
05_03_0507 + 14814761-14815272,14816215-14816346,14817391-14817403 31 3.4
08_02_1213 - 25329775-25330227 30 4.5
06_03_1132 - 27883151-27883777 30 4.5
03_01_0515 - 3864796-3865425 30 4.5
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 30 4.5
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 30 4.5
06_03_0219 - 18227559-18227858,18227864-18228340 30 5.9
02_05_0310 + 27769988-27770830 30 5.9
05_07_0162 + 28090579-28091343 29 7.8
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 33.9 bits (74), Expect = 0.36
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 511 NVLAVPAASKAHTGPAGGDTHRPAH-SGGGTPSPTRARTNSAGDRISGSSTSLAS 350
N P+AS + T T P+ S GTPSP+ + +NS+G + S+S +S
Sbjct: 211 NTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSSPSNSSGGSTARDSSSPSS 265
>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
Length = 258
Score = 31.1 bits (67), Expect = 2.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 330 FIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPLC 440
F+PS + +A E EPE + R +G GVP C
Sbjct: 120 FLPSAVNEAEENGEPEDQCEDGKHRTHIGNGVPAQYC 156
>05_03_0507 + 14814761-14815272,14816215-14816346,14817391-14817403
Length = 218
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -2
Query: 481 AHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIR 341
A G +GG R + S PSP + R AG R +TSL P+R
Sbjct: 125 AGAGTSGGPVRRVSSSSRSPPSPVQPRQGGAGSRRRYITTSL-FPLR 170
>08_02_1213 - 25329775-25330227
Length = 150
Score = 30.3 bits (65), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -2
Query: 481 AHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSST 362
AH G GG + SG G RA + A +RISGSST
Sbjct: 57 AHRGGTGGGATQ--RSGAGGKMRRRAGSGGAEERISGSST 94
>06_03_1132 - 27883151-27883777
Length = 208
Score = 30.3 bits (65), Expect = 4.5
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 457 RPPPDQCALSTPRAQPEHSPLYANWRPFPVARARITRSRASVNAD*LNFVKWFPS 621
RPPP + + S R + HS L R A +R+R +V A V+W PS
Sbjct: 120 RPPPPRASRSGSRRRHRHSLLPRASRARGDVAAAASRARGAVVAATSRLVRWEPS 174
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 4.5
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +3
Query: 270 LLLYVVLATACYEIQSA----TLRFIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPL 437
LLL +LAT I +A T PS +A+ P SP L PPP
Sbjct: 5 LLLLALLATFVVAIANADDYTTAAPAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPP 64
Query: 438 CAGRCVSPPAGP 473
AG + PP P
Sbjct: 65 AAGPLMPPPPPP 76
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 496 PAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIRDGM 332
PA++ + + PA G P+ + PSP +S + SS+ L +P+ G+
Sbjct: 27 PASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVVGI 81
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 804 RKKGIYVLFLQKKLSLKNNYNIKICDRICVVKYNISFFFEKIIVLVHSADSEK 646
R G+++L L+KK+ KN K C C + I F + L H K
Sbjct: 368 RSNGVFILDLEKKVMEKNTAVTKCCVSDCRIHMEIEFVGDHSYSLNHERGRRK 420
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 29.9 bits (64), Expect = 5.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 454 CRPPPDQCALSTPRAQPEHSPLYANWRPFP 543
CRPPP CA ST R SP A+ P P
Sbjct: 74 CRPPPAACAASTVRRPAAPSPPPASPPPPP 103
>02_05_0310 + 27769988-27770830
Length = 280
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 436 SGGGTPSPTRARTNSAGDRISGSSTS 359
S GTPS T R SAG SGS+T+
Sbjct: 33 SAAGTPSTTATRRRSAGTNPSGSTTT 58
>05_07_0162 + 28090579-28091343
Length = 254
Score = 29.5 bits (63), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 429 PPLCAGRCVSPPAGPV 476
PPL GRCV PP PV
Sbjct: 52 PPLAGGRCVGPPLYPV 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,752,195
Number of Sequences: 37544
Number of extensions: 562779
Number of successful extensions: 2057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5220948600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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