Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_F05_e326_11.seq
(1607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 37 0.039
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 33 0.48
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.48
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.64
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 1.5
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.5
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 2.6
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.5
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 29 7.9
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.9
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 37.1 bits (82), Expect = 0.039
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +3
Query: 294 TACY-EIQSAT--LRFIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPLCAGRCVSPP 464
T C+ E+++ T + +R G+ +SP+ R +V +G P +C P
Sbjct: 96 TKCHMEVEACTESRSMMVARRGECGPCASLRCKSPS---RCQVIKGKPQCVCRDVRECPS 152
Query: 465 A-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
+ PVC+ T TF T C +E +C ES + GEC
Sbjct: 153 SMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 190
Score = 32.7 bits (71), Expect = 0.84
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 462 PAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 695 PAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 EGVPPPLCAGRCVSPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
+G P +C P + PVC+ T TF T C +E +C ES + GEC
Sbjct: 66 KGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
Score = 31.9 bits (69), Expect = 1.5
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +3
Query: 291 ATACYEIQSATLRFIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPLCAGRCVSPPAG 470
ATAC + ++ T+ + G V +R P + EG C C PP+G
Sbjct: 1637 ATACQQNRNITV----AHHGACERVSCGNIRCPRFSMCISAQEGGIKCSCPIYC--PPSG 1690
Query: 471 -PVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
PVC D +++ + CEL +C + S G+C
Sbjct: 1691 QPVCGSDG----KSYGSECELRKEACEAKIKLTLVSKGKC 1726
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 33.5 bits (73), Expect = 0.48
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 387 PAELVRARVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYA 566
P +AR +G P +C G C S PVC D + ++ C L+ SCR++
Sbjct: 5280 PYSYCKAR--DGRPECVCDGIC-SLVYAPVCGTDG----QEYSNECNLQIASCRKNELIE 5332
Query: 567 ITSLGEC 587
+ S G C
Sbjct: 5333 VASRGSC 5339
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 33.5 bits (73), Expect = 0.48
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 420 GVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
G P +C C S + PVC D +T+ CEL+ +C + S GEC
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
Score = 29.9 bits (64), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 408 RVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSC 545
+V + P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 33.1 bits (72), Expect = 0.64
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 408 RVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
R +G P +C C S PVC D T+ LC L +C ++T + GEC
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 31.9 bits (69), Expect = 1.5
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 420 GVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
G P +C C A PVC D +T+ C LE SC+ +T ++ G C
Sbjct: 36 GQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 31.9 bits (69), Expect = 1.5
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Frame = -2
Query: 601 NSVNQHSPRLVIA*YVL-SRQETASS---SHRVANVLAVPAASKAHTG--PAGGDTHRPA 440
N + + +VIA ++ S Q+T+ + H V A + H+ P G D RPA
Sbjct: 408 NKMTASNIAIVIAPNIIYSEQDTSDAINLHHTGVQSSIVEALIQHHSWFFPEGVDFFRPA 467
Query: 439 --HSGGGTP---SPTRARTNSAGDRISGSSTSLASPIRDGM 332
+ G +P SPT R SA D + + +P+R+GM
Sbjct: 468 PVSTNGSSPASASPTPPRFESANDASADPGATKQAPVREGM 508
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.1 bits (67), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 438 CAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
C C S A PVC D RT+++ C ++A +C+ T A+ G C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 31.1 bits (67), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 471 PVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
PVC D +T+ CE+ A +C +ST + GEC
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 30.3 bits (65), Expect = 4.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 456 SPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
SP + +C D RT+++ C L SC Y+I +G C
Sbjct: 226 SPRSTEICGTDG----RTYSSFCALREHSCNVGRLYSIKHIGRC 265
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.9 bits (64), Expect = 5.9
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 450 CVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 587
C+ P + A T+ + C LE SC+ Y I G+C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 584 MLIN*ISLNGFLQNVVKLNTAFSESAECTN---TIIFSKKKLI 703
+L+N SL+GFL N + + F++ + N TI+FSKK L+
Sbjct: 203 ILLNIQSLSGFLINALIMGLIFAKLSRPRNRAETILFSKKALV 245
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 439 APDGACRPPPDQCALSTPRAQPEHSPLYANWR-PFPVARAR 558
AP G PPP +TP P SP WR PF R+R
Sbjct: 746 APPGIYLPPPPAATAATP---PPSSPSGDEWRQPFTARRSR 783
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,728,947
Number of Sequences: 59808
Number of extensions: 593743
Number of successful extensions: 1567
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5243408081
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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