Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_F05_e326_11.seq
(1607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66496-1|CAA91282.1| 404|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 31 2.3
AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical ... 30 4.0
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 30 5.3
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 5.3
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 29 9.2
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 29 9.2
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 29 9.2
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 29 9.2
>Z66496-1|CAA91282.1| 404|Caenorhabditis elegans Hypothetical
protein E04D5.2 protein.
Length = 404
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 765 IFFEEIEHKXPFSXRPVXLR*FLSPGV*KHL-GF--RVPXIFQXLXFLI*KKLPTPV 926
+F+ +I PF + +R FLS KHL GF + P FQ L + + LP+ +
Sbjct: 6 LFYADIHSTIPFKCEKLKIRVFLSENAQKHLFGFFLKYPINFQLLMAVFRRSLPSSI 62
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 496 PAASKAHTGPAGGDTHRPAHSGG-GTPSPTRARTNSAGDRISGSSTSLASPIRDG 335
PA + GPAGG +P SGG G P P A G G +P DG
Sbjct: 203 PAGAPGPQGPAGGPG-QPGQSGGAGAPGPAGAPGAPGGPGQPGQDGQPGAPGNDG 256
>AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical
protein Y48G1C.11 protein.
Length = 414
Score = 30.3 bits (65), Expect = 4.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 436 YAPDGACRPPPDQCALSTPRAQPEHSPLYANWRPFPVARARITRS 570
YA D + P P + TP + SP Y + P PV R+ R+
Sbjct: 330 YAFDDSLSPRPHSRTVETPILKNSPSPSYTPFHPTPVHRSNTVRA 374
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 502 AVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIRDG 335
A PA + GPAG D A GG P P AGD +G+ + +P DG
Sbjct: 139 AGPAGAPGAPGPAGPDGQPGADGQGGAPGPA-GPEGPAGD--AGAPGAPGAPGNDG 191
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.9 bits (64), Expect = 5.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -2
Query: 496 PAASKAHTGPAGGDTHRPAHSGG-------GTPSPTRARTNSAGDRISGSSTSLASP 347
P+ GPAGG +P HSGG G P P+ +S D + G+ + SP
Sbjct: 206 PSGRPGPPGPAGG-PGQPGHSGGAGSPGPQGPPGPSGQPGHSGNDGVPGAPGNPGSP 261
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 29.1 bits (62), Expect = 9.2
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 532 SSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLA 353
S + ++ A + ++HT +GG T S G+P+ + ART S S S
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 441
Query: 352 SPIRDGMNRRVADCIS*Q 299
S + NR +++ +S Q
Sbjct: 442 SWELERGNRPMSERVSSQ 459
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 29.1 bits (62), Expect = 9.2
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 532 SSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLA 353
S + ++ A + ++HT +GG T S G+P+ + ART S S S
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 454
Query: 352 SPIRDGMNRRVADCIS*Q 299
S + NR +++ +S Q
Sbjct: 455 SWELERGNRPMSERVSSQ 472
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 29.1 bits (62), Expect = 9.2
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 532 SSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLA 353
S + ++ A + ++HT +GG T S G+P+ + ART S S S
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 453
Query: 352 SPIRDGMNRRVADCIS*Q 299
S + NR +++ +S Q
Sbjct: 454 SWELERGNRPMSERVSSQ 471
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 29.1 bits (62), Expect = 9.2
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 532 SSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLA 353
S + ++ A + ++HT +GG T S G+P+ + ART S S S
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 456
Query: 352 SPIRDGMNRRVADCIS*Q 299
S + NR +++ +S Q
Sbjct: 457 SWELERGNRPMSERVSSQ 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,669,976
Number of Sequences: 27780
Number of extensions: 459617
Number of successful extensions: 1453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4670504100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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