Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F05_e326_11.seq
         (1607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb...    32   0.92 
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb...    32   0.92 
At3g28920.1 68416.m03611 zinc finger homeobox family protein / Z...    31   2.8  
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot...    30   3.7  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   6.5  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    29   6.5  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    29   8.6  

>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
           gb|R64895 come from this gene
          Length = 140

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 457 DTHRPAHSGGGTPSPT-RARTNSAGDRISGSSTSLASPIRDGMNRRVADC 311
           D  RP  +GGG P    R+R+N  G +    +T   SP  D  + R++ C
Sbjct: 64  DKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSC 113


>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
           gb|R64895 come from this gene
          Length = 145

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 457 DTHRPAHSGGGTPSPT-RARTNSAGDRISGSSTSLASPIRDGMNRRVADC 311
           D  RP  +GGG P    R+R+N  G +    +T   SP  D  + R++ C
Sbjct: 64  DKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSC 113


>At3g28920.1 68416.m03611 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam PF04770:
           ZF-HD protein dimerisation region; contains Pfam
           TIGR01566: ZF-HD homeobox protein Cys/His-rich domain;
           contains TIGRFAM TIGR01565: homeobox domain, ZF-HD
           class; similar to ZF-HD homeobox protein (GI:13277220)
           [Flaveria bidentis]
          Length = 312

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 409 GSAKAYHRHYAPDGACRPPPDQCALSTPRAQPEHSPLYANWRPFPVA 549
           G  + +HR    D +  PPP     ST  A  E+ P + +  P P+A
Sbjct: 94  GCHRNFHRRETDDSSAVPPPSLLPSSTTTAAIEYQPHHRHHPPPPLA 140


>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
           similar to PolI-like DNA polymerase [Oryza sativa]
           GI:19912795; contains Pfam profiles PF01612: 3'-5'
           exonuclease, PF00476: DNA polymerase I family A
          Length = 1034

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 774 QKKLSLKNNYN-IKICDRICVVKYNISFFFEKIIVLVHSADSEKAVLSLTTF*RKPFNEI 598
           Q + +LK  YN +++ D +   K  ++    +   LVH+ D+E + + + T       E+
Sbjct: 232 QVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVKTETPVDHGEM 291

Query: 597 QLISIHRGS 571
              SI+ GS
Sbjct: 292 ICFSIYCGS 300


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -2

Query: 586 HSPRLVIA*YVLSRQETASSSHRVANVLA-VPAASKAHTGPAGGDTHRPAHSGGGTPSPT 410
           HSP    A +  S     + SH  A+  +  PA + +H+ PA   +H PAHS   +P+  
Sbjct: 219 HSPSHSPA-HTPSHSPAHTPSHSPAHAPSHSPAHAPSHS-PAHAPSHSPAHSPSHSPATP 276

Query: 409 RARTNSAGDRISGSSTSLASP 347
           ++ + S+    S ++ S  +P
Sbjct: 277 KSPSPSSSPAQSPATPSPMTP 297


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -2

Query: 586 HSPRLVIA*YVLSRQETASSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTR 407
           H+ R +   +  S   +  +  R A  LA PA+   H   +GGD     H+   + +  R
Sbjct: 411 HNQRRLSENFRRSLLSSLVTQQRAARSLAHPASPNEHVLQSGGDNTSQVHNRASSRAGPR 470

Query: 406 ARTNSAGDRISGSSTSLASPIR 341
              ++ G  IS S   LAS  R
Sbjct: 471 QGQDATG--ISHSLRGLASTSR 490


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 953

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 617 LQNVVKLNTAFSE-SAECTNTIIFSKKKL 700
           LQN+V LN +F+E S E  NT+ F K  L
Sbjct: 646 LQNLVSLNISFNEFSGELPNTLFFRKLPL 674


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,020,867
Number of Sequences: 28952
Number of extensions: 407382
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4347004992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)