Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    31   3.4  

>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 592 ASQQSANGAMAPTNVINTGM-SLSNPVMNSTANLNTT--GLLGANQIHGGSPNLLGSQTK 762
           +SQQ  NG     N++NT M S + P +N  +    T  GL   N  H G+    G QT+
Sbjct: 248 SSQQINNGPKNSGNIVNTSMASNAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQ 307

Query: 763 GVELDD 780
            +   D
Sbjct: 308 SLLASD 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,434,620
Number of Sequences: 37544
Number of extensions: 540129
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5197744384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)