Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.9  

>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 544  KPYTQNDQPKSHCDSNASQQSANGAMAPTNVINTGMSLSNPVMNSTANL 690
            +P T  D+PK+ C+S+ +Q +  G + P NVI    +    +MN   N+
Sbjct: 1109 QPNTGTDEPKAQCNSSRTQPN-TGTIEPPNVIVHDPNPIQVLMNLKPNV 1156


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
 Frame = +1

Query: 547  PYTQNDQPKSHCDSNASQQSANGAMAPTNVINTGMSLSNPVM------NSTANLNTTGLL 708
            P   N  P+S C +  S  + N + A  +  N     S+P +      +S+A+ N+  LL
Sbjct: 963  PSLNNPNPRSSCTTPPSSDTTNSSSAGPSATNNASPSSSPYVASAPGKDSSASANSWYLL 1022

Query: 709  GANQIHGGSPNLLGSQTKGVELDDPRYYSLNKDRKR 816
              +++   S       TK    D P Y  + K+  R
Sbjct: 1023 NDSRVSYASFESFSDITKRFPKDTP-YVLIYKNISR 1057


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,623,558
Number of Sequences: 59808
Number of extensions: 603207
Number of successful extensions: 1407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5258524096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)