Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    31   0.070
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   8.0  

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 31.5 bits (68), Expect = 0.070
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 553 TQNDQPKSHCDSNASQQSANGAMAPTNVINTGMSLSNPVMNSTANLNTT--GLLGANQIH 726
           +Q  QP+S   S + + ++ G    TNVIN     +N    S  +L+T   G  GAN  +
Sbjct: 112 SQQQQPQSALTSQSCKYASEGPSTGTNVINNN---NNNSTTSPQDLSTASGGSSGANDGN 168

Query: 727 GGSPNL 744
            G P +
Sbjct: 169 NGRPEI 174


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 670  MNSTANLNTTGLLGANQIHGGSPNLLGSQTKGVELDDPRYYS 795
            +N  + +N     G +    G P+ LG       LD P+++S
Sbjct: 1215 LNKRSAINIYATAGNDYNTPGRPSTLGPSVASTRLDGPQHHS 1256


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,057
Number of Sequences: 2352
Number of extensions: 19268
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 187879995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)