Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126401-1|AAI26402.1|  445|Homo sapiens spermidine/spermine N1-...    33   3.9  
Z99571-1|CAI42723.1|  445|Homo sapiens spermidine/spermine N1-ac...    32   6.7  
BC043215-1|AAH43215.2|  445|Homo sapiens spermidine/spermine N1-...    32   6.7  
BC064976-1|AAH64976.1|  486|Homo sapiens recombination signal bi...    31   8.9  
BC020780-1|AAH20780.1|  485|Homo sapiens recombination signal bi...    31   8.9  
AK126357-1|BAC86536.1|  331|Homo sapiens protein ( Homo sapiens ...    31   8.9  

>BC126401-1|AAI26402.1|  445|Homo sapiens spermidine/spermine
           N1-acetyl transferase-like 1 protein.
          Length = 445

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
 Frame = +1

Query: 559 NDQPKSHCDSNASQQSANGAMAP-TNVINTGMSLSNPVMNSTANLNTTGLLGANQ--IHG 729
           + Q  SH D +    S      P     +T  S  N    S  + N + L  +NQ  I  
Sbjct: 17  SQQVPSHPDMSQPGMSQQVPSQPGIRQPDTSQSCKNQTDMSQPDANQSSLSDSNQTGIIQ 76

Query: 730 GSPNLLGSQTKGVELDDPRYYSLNK-DRKRKYDGQ*RKRI*CGRGSPKVNXPGLNVPST 903
            SP+LLG     +       Y +N+ D K+    Q   R   G   P +N PG+  P T
Sbjct: 77  PSPSLLGMNQMDMNQRSASLYEMNQVDMKQPSMSQAGMRQ-SGTNLPDINQPGMKQPGT 134


>Z99571-1|CAI42723.1|  445|Homo sapiens spermidine/spermine
           N1-acetyl transferase-like 1 protein.
          Length = 445

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
 Frame = +1

Query: 559 NDQPKSHCDSNASQQSANGAMAP-TNVINTGMSLSNPVMNSTANLNTTGLLGANQ--IHG 729
           + Q  SH D +    S      P     +T  S  N    S  + N + L  +NQ  I  
Sbjct: 17  SQQVPSHPDMSQPGMSQQVPSQPGIRQPDTSQSCKNQTDMSQPDANQSSLSDSNQTGIIQ 76

Query: 730 GSPNLLGSQTKGVELDDPRYYSLNK-DRKRKYDGQ*RKRI*CGRGSPKVNXPGLNVPST 903
            SP+LLG     +       Y +N+ D K+    Q   R   G   P +N PG+  P T
Sbjct: 77  PSPSLLGMNQMDMNQWSASLYEMNQVDMKQPSMSQAGMRQ-SGTNLPDINQPGMKQPGT 134


>BC043215-1|AAH43215.2|  445|Homo sapiens spermidine/spermine
           N1-acetyl transferase-like 1 protein.
          Length = 445

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
 Frame = +1

Query: 559 NDQPKSHCDSNASQQSANGAMAP-TNVINTGMSLSNPVMNSTANLNTTGLLGANQ--IHG 729
           + Q  SH D +    S      P     +T  S  N    S  + N + L  +NQ  I  
Sbjct: 17  SQQVPSHPDMSQPGMSQQVPSQPGIRQPDTSQSCKNQTDMSQPDANQSSLSDSNQTGIIQ 76

Query: 730 GSPNLLGSQTKGVELDDPRYYSLNK-DRKRKYDGQ*RKRI*CGRGSPKVNXPGLNVPST 903
            SP+LLG     +       Y +N+ D K+    Q   R   G   P +N PG+  P T
Sbjct: 77  PSPSLLGMNQMDMNQWSASLYEMNQVDMKQPSMSQAGMRQ-SGTNLPDINQPGMKQPGT 134


>BC064976-1|AAH64976.1|  486|Homo sapiens recombination signal
           binding protein for immunoglobulin kappa J region
           protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 550 YTQNDQPKSHCDSNASQQSANGAMAPTNVINTGM--SLSNPVMNSTANLNTT 699
           YT    P+ HC +  +   AN +  P N  NT    S +N   NST+  ++T
Sbjct: 430 YTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSST 481


>BC020780-1|AAH20780.1|  485|Homo sapiens recombination signal
           binding protein for immunoglobulin kappa J region
           protein.
          Length = 485

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 550 YTQNDQPKSHCDSNASQQSANGAMAPTNVINTGM--SLSNPVMNSTANLNTT 699
           YT    P+ HC +  +   AN +  P N  NT    S +N   NST+  ++T
Sbjct: 429 YTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSST 480


>AK126357-1|BAC86536.1|  331|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44386 fis, clone TRACH3036609, highly  similar
           to J kappa-recombination signal binding protein. ).
          Length = 331

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 550 YTQNDQPKSHCDSNASQQSANGAMAPTNVINTGM--SLSNPVMNSTANLNTT 699
           YT    P+ HC +  +   AN +  P N  NT    S +N   NST+  ++T
Sbjct: 275 YTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSST 326


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,747,953
Number of Sequences: 237096
Number of extensions: 2912081
Number of successful extensions: 13440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13440
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23957124682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)