Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    26   1.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 571 KSHCDSNASQQSANGAMAPTNVINTGMSLSNPVMNSTANLNTTGLLGANQIHGGSPNLLG 750
           K H D      + +GA     +I  G+   NP   +T N    GLL      GG   LLG
Sbjct: 331 KMHIDDPVGASATHGASGIWGIIAIGLFADNPYPLNTTN-GRKGLL-----KGGGGYLLG 384

Query: 751 SQ 756
            Q
Sbjct: 385 IQ 386


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 811 SYPYSNYNNGGHLTRRLSFESRV 743
           +Y YSNYNN  +  ++L +++ +
Sbjct: 88  NYKYSNYNNYNNYNKKLYYKNYI 110


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 445 FLQGERDTSPPP 480
           FL G R TSPPP
Sbjct: 407 FLIGSRRTSPPP 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,871
Number of Sequences: 438
Number of extensions: 5335
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 56463000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)