Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F04_e318_12.seq
         (1602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10250.2 68416.m01227 expressed protein                             31   2.8  
At3g10250.1 68416.m01226 expressed protein                             31   2.8  
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly...    31   2.8  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    30   3.7  
At2g04840.1 68415.m00497 F-box family protein similar to F-box p...    29   8.6  

>At3g10250.2 68416.m01227 expressed protein
          Length = 324

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 568 PKSHCDSNASQQSANGAMAPTNVINTGMSLSNPVMNSTANLNTTGLLGAN-QIHG----G 732
           P  H D +   +SA+  MA         SLSN  +N ++ LNT      N   H      
Sbjct: 121 PSEHTDQSLKSESAHHPMAS--------SLSNAFLNGSSTLNTNVPSSINISTHARRVDA 172

Query: 733 SPNLLGSQTKGVEL 774
           SPN+L SQT  + +
Sbjct: 173 SPNMLSSQTTNMPM 186


>At3g10250.1 68416.m01226 expressed protein
          Length = 324

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 568 PKSHCDSNASQQSANGAMAPTNVINTGMSLSNPVMNSTANLNTTGLLGAN-QIHG----G 732
           P  H D +   +SA+  MA         SLSN  +N ++ LNT      N   H      
Sbjct: 121 PSEHTDQSLKSESAHHPMAS--------SLSNAFLNGSSTLNTNVPSSINISTHARRVDA 172

Query: 733 SPNLLGSQTKGVEL 774
           SPN+L SQT  + +
Sbjct: 173 SPNMLSSQTTNMPM 186


>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein identical to Probable
           FKBP-type peptidyl-prolyl cis-trans isomerase 2,
           chloroplast precursor (Ppiase) (Rotamase)
           (SP:O22870)[Arabidopsis thaliana]; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 223

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 716 LAPNSPVVFKFAVEFITGL 660
           +APNSPV+F  ++EFI GL
Sbjct: 200 VAPNSPVIFDVSLEFIPGL 218


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 598 QQSANGAMAPTNVINTGMS-LSNPVMNSTANLNTTG--LLGANQIHGGSPNLLGSQTKGV 768
           +++ N   +    IN   + LS P+  S  NL +    LLGAN++ G  P  +GS    +
Sbjct: 458 EEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLL 517

Query: 769 ELDDPR 786
           ++D  R
Sbjct: 518 KIDMSR 523


>At2g04840.1 68415.m00497 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 389

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 303 ICSLFCKETKFFLYIRNYHLRLFLFT 226
           +  + C+  K +LY  N+H+R+F F+
Sbjct: 204 VFDMACENNKLYLYTANHHIRIFDFS 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,462,827
Number of Sequences: 28952
Number of extensions: 403172
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4327727808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)