Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F03_e310_11.seq
         (1602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   4.1  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   7.2  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    27   7.2  

>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 666 EPEWTPELNTFIFFETYTQRLFKSIQSSPSFFRVSQRHT 782
           E +W+ E+N       +  RL +    +P+F + S  HT
Sbjct: 177 EVQWSSEMNYHFLLSKFQSRLIEHYNKNPNFVQPSIFHT 215


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 597 FKKKTSNCFFCFNVYVYVDQIKIEPEWTPELNTFIFFETYTQRLFKSIQSSPSFFRVSQR 776
           +KK   N  +C+  YVY DQ         ++N     E   + LF SI+  P F  + + 
Sbjct: 133 YKKSELNKGYCYIEYVYHDQ---AANAVDKMNN---AELDGEELFVSIKRFP-FESLHKN 185

Query: 777 HTHTSLSFKP 806
           H H   S++P
Sbjct: 186 HKHYENSYRP 195


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 470 NVIYRCFSGINC----KNNANEAAGRTQLELN 553
           N++ RCFS +N     KN  N+AAG T  +LN
Sbjct: 243 NILSRCFSILNKNIRQKNTENDAAGFTINDLN 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,338,410
Number of Sequences: 5004
Number of extensions: 81228
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 905853518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)