Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F03_e310_11.seq
         (1602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          31   2.0  
SB_49795| Best HMM Match : Astacin (HMM E-Value=6.6e-36)               31   3.4  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         30   4.5  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    30   6.0  

>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 679 HQNLTHLFS--SKLIHSVFLNLFNRRHLSLE*VNVTHILPFHSNLTIRFYXHSYIYHNKV 852
           +  LTHL    S + HS   +L    HL+L    +TH    HS LT     HS + H+ +
Sbjct: 59  YSTLTHLTITYSTITHSTLTHL-TLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTI 117

Query: 853 XNPT 864
            + T
Sbjct: 118 THST 121



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 751 HLSLE*VNVTHILPFHSNLTIRFYXHSYIYHNKVXNPT 864
           HL+L   N+TH+   HSNLT     HS + H  + + T
Sbjct: 9   HLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHST 46


>SB_49795| Best HMM Match : Astacin (HMM E-Value=6.6e-36)
          Length = 267

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 FSGINCKNNANEAAGRTQLELNESNLFDSCHSNEIVF 598
           F G  C +N   A GR QL L     +    S+EIVF
Sbjct: 100 FQGSGCYSNVGVAGGRQQLSLASGCWYQGTTSHEIVF 136


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 723  RLFKSIQSSPSFFRVSQRHTHTSL 794
            RL + +QS  SFFR+S+RHT   +
Sbjct: 2269 RLIEFVQSLVSFFRISRRHTRVGM 2292


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 570 TAVIPMKLYFKKKTSNCFFCFNVYVYVDQIKIEPEWTPELN 692
           T  +P++    K T N F  FNV      +KI+ E+TPELN
Sbjct: 268 TTAVPLEAVDTKTTENDFKEFNV-----DMKIDKEFTPELN 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,246,290
Number of Sequences: 59808
Number of extensions: 548897
Number of successful extensions: 1297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5258524096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)