Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F03_e310_11.seq
         (1602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    32   0.99 

>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 446 CSNNLKSFNVIYRCFSGINCKNNANEAAGRTQLELNESNLFDSCHSN 586
           C+NN+ + + IY  F   NC++    A   T  ELN  NL+D C+ N
Sbjct: 234 CNNNIGTCD-IYSKFFDPNCRDKVINALDGTN-ELNMYNLYDVCYYN 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,259,356
Number of Sequences: 27780
Number of extensions: 462556
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4649746304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)