Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F02_e302_12.seq
         (1562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical pr...    32   1.3  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    30   5.1  

>Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical
           protein C31G12.1 protein.
          Length = 199

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 260 TSYRLNSLSLIY*NIRFIVCRNIEFCDNES 171
           T +RLNSLSL+      I+C N   CDN S
Sbjct: 75  TVWRLNSLSLVACGFFTIICANQYICDNHS 104


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 541 LLTGNFRYFSGRYSKVWVEISRNVIESHLIS 449
           L+TG +R+  G Y +VWV   RN +   L++
Sbjct: 886 LITGTYRHAMGEYLRVWVANKRNPLICMLLA 916


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,908,599
Number of Sequences: 27780
Number of extensions: 326604
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)