Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_F01_e294_11.seq
         (1556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   149   4e-36
AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-relat...    31   1.7  
AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase prote...    31   1.7  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  149 bits (362), Expect = 4e-36
 Identities = 81/158 (51%), Positives = 98/158 (62%)
 Frame = +2

Query: 104 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 283
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 284 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 463
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 464 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 577
           AYR         +K  + GPG A V +R GFGRG   P
Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148


>AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-related
           protein 2A protein.
          Length = 826

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 636 PGPPSSXXXXXXXXXXIKT*GADRPLPKPPLNSTSAEPGPTSA 508
           PGP +S            T  +D P P+ P   + A+PGPT++
Sbjct: 493 PGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535


>AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase protein
           2 protein.
          Length = 826

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 636 PGPPSSXXXXXXXXXXIKT*GADRPLPKPPLNSTSAEPGPTSA 508
           PGP +S            T  +D P P+ P   + A+PGPT++
Sbjct: 493 PGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,457,622
Number of Sequences: 27780
Number of extensions: 468092
Number of successful extensions: 1246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)