Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E11_e373_09.seq
(1535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 305 1e-83
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 60 6e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 4e-04
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 38 0.004
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.14
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar... 29 1.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 3.0
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 5.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 305 bits (749), Expect = 1e-83
Identities = 160/225 (71%), Positives = 175/225 (77%), Gaps = 3/225 (1%)
Frame = +1
Query: 136 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 306
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 307 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 486
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 487 VVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 666
VVDLLAPYA TV I ELINN+AKAHGGYSVF GVGERTREGNDLY
Sbjct: 186 VVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYR 245
Query: 667 EMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYF 801
EM E+GVI L+ + SK ALV+GQMNEPPGARARVALTGLTVAEYF
Sbjct: 246 EMQETGVIKLEGE-SKAALVFGQMNEPPGARARVALTGLTVAEYF 289
Score = 87.0 bits (206), Expect = 6e-18
Identities = 54/94 (57%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Frame = +2
Query: 800 FRDQEGQDVLLFIDNIFRFTQAGSEXSALLGRIPSAXVTSP-L*H*HGYYAXKNYXFXEG 976
FRD EGQDVLLFIDNIFRFTQAGSE SALLGRIPSA P L G + +G
Sbjct: 289 FRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKG 348
Query: 977 XHYFCTSYYVPADDLTDPA-RXXIXXLDAPQVXS 1075
+ YVPADDLTDPA LDA V S
Sbjct: 349 SITSVQAVYVPADDLTDPAPATTFAHLDATTVLS 382
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 60.5 bits (140), Expect = 6e-10
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 8/208 (3%)
Frame = +1
Query: 217 VAQHLGENTVRTIAMDGTEGLVR-GQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGP 393
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 394 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIM 573
I T + + +AP + + E + TG+K +D + P T + +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIAL 208
Query: 574 ELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYG 732
+ I N + + Y V+ VG++ L ++ E+ D +V
Sbjct: 209 DTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEEN------DSLKYSIIVAA 262
Query: 733 QMNEPPGARARVALTGLTVAEYFP*SGR 816
+E + +G + E+F +G+
Sbjct: 263 TASESAPLQYLAPFSGCAMGEWFRDNGK 290
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 41.1 bits (92), Expect = 4e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 208 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDE 384
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 385 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 495
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 37.9 bits (84), Expect = 0.004
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Frame = +1
Query: 409 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 588
T + A P +++ Q +L TG +V+D L P TV+ L
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPGAFGCGKTVISQSLSKY 274
Query: 589 VAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-ISLKDKT--SKVALVYGQMNEPPGAR 759
++ V+ G GER E ++ + E + I+ K + + LV N P AR
Sbjct: 275 ---SNSDLIVYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAR 331
Query: 760 ARVALTGLTVAEYFP*SGRS 819
TG+T+AEY+ G++
Sbjct: 332 EASIYTGITLAEYYRDQGKN 351
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 268 TEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDE 384
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.14
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Frame = -1
Query: 653 LPSRVRSPTPANTE*PPWALATLLISSIISTVXXXXXXXXXXXXXXLA*GASKSTTL-MP 477
LP+ S T +T PP ++ L + I TV + ++ + + +P
Sbjct: 165 LPTTSTSCT-TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Query: 476 VTRISCCTDMSTNSGASAWMAAVLSVGIGPRSSIGSPMTLMIRPRVSAPTGIRMGE-PES 300
T SC T S +G S+ ++ ++ + P S+ S ++ I P ++ T P +
Sbjct: 224 TTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST--SSTSIPIPPTSTSSTDTNSSPLPTT 281
Query: 299 CTGCPRTKPSVPSMAMVRTVFSPKCCATSNT 207
T C T S+P T +P TS +
Sbjct: 282 STSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPAC15E1.06 |vps29||retromer complex subunit
Vps29|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 468 DLLLYGHVYKFGSFSVDGSCFISRNRAAFVNRLTDDIDD 352
D+LL+G +KF ++ +DG F++ A ++ DD
Sbjct: 109 DILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDD 147
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 392 GPRSSIGSPMTLMIRPRVSA-PTGIRMGEPESCTGCPRTKPSVPSM 258
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 176 LSRYKIAPLVSYWRSRSTWVKIRSEPLPWTVP 271
L+RY I+P +S S ++I S +PW P
Sbjct: 219 LNRYDISPAAFILKSGSPSLQIHSVEIPWVEP 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,692,760
Number of Sequences: 5004
Number of extensions: 89716
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 862245690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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