Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E11_e373_09.seq
(1535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 44 2e-04
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 36 0.11
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 33 0.45
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 33 0.79
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 32 1.4
03_01_0145 - 1158306-1158706,1159012-1159177,1159250-1159438,115... 31 3.2
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 30 4.2
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 29 7.4
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 29 9.8
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 9.8
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 29 9.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 232 GENTVRTIAMDGTEGLV-RGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 408
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 409 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 501
I + + + +E++ TGI +D++
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVM 194
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.5 bits (78), Expect = 0.11
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +1
Query: 232 GENTVRTIAMDGTEGLV-RGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 408
GE V + +GT G+ + V +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 409 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLL 501
I A A ++ S + +E++ TGI +D++
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVM 163
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 33.5 bits (73), Expect = 0.45
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Frame = +1
Query: 469 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 648
L+TG +V+D L P TV I + ++ + + V+ G GER
Sbjct: 246 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSEA--VVYVGCGER--- 299
Query: 649 GNDLYHEMIESGVISL-------KDKTSKVALVYGQMNEPPGARARVALTGLTVAEYF 801
GN++ +++ +++ + + LV N P AR TG+T+AEYF
Sbjct: 300 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF 357
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 32.7 bits (71), Expect = 0.79
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +1
Query: 469 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 648
L+TG +V+D L P TV I + ++ + + V+ G GER E
Sbjct: 232 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSQA--VVYVGCGERGNE 288
Query: 649 GNDLYHEMIESGVISLKDKTSKV----ALVYGQMNEPPGARARVALTGLTVAEYF 801
++ + + + + + V LV N P AR TG+T+AEY+
Sbjct: 289 MAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYY 343
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.9 bits (69), Expect = 1.4
Identities = 23/75 (30%), Positives = 27/75 (36%)
Frame = -1
Query: 392 GPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSMAMVRTVFSPKCCATS 213
GPR L P V + G P + G PR PS P + PKC
Sbjct: 841 GPRPPTTRAGPLPACPTVPGAPDPQDG-PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLK 898
Query: 212 NTRRGERFCTSRAFR 168
R G FCT F+
Sbjct: 899 LLREGAAFCTQDCFK 913
>03_01_0145 -
1158306-1158706,1159012-1159177,1159250-1159438,
1159554-1159766
Length = 322
Score = 30.7 bits (66), Expect = 3.2
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = -3
Query: 510 IGCEQIHDFDASHKDLLLYGHVYKFGSFSVDGSCFISRNRAAFVNRLTDDIDDTAQSLGS 331
+ C I F A +L G Y+ + DG+ ++ + A + R T D+ QS +
Sbjct: 118 VSCADILAFAARDSVVLAGGTPYRVPAGRRDGNTSVASDAMANLPRPTSDVAQLTQSFAT 177
Query: 330 YGDTDG*TRVMYGLSAH*TLGTVH-GNGSDRIF 235
+G + ++ G AH T+G H + S R++
Sbjct: 178 HGLSQDDMVILSG--AH-TIGVAHCSSFSSRLY 207
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 154 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGS 312
NLPP+L ++ +N + +L+ GEN +R T + + +H++ S
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAFWSHTPCTLESKDLHEACS 2878
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 29.5 bits (63), Expect = 7.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 595 KAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVAL 774
+ H G S +A + RT L ++ E + + + V+G++NEP G +A + L
Sbjct: 67 RPHSG-SNYAVLTRRTHNWQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKL 125
Query: 775 TG 780
G
Sbjct: 126 EG 127
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.1 bits (62), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 275 PSVPSMAMVRTVFSPKCCATS 213
P+ PS A VR SP+CC+ S
Sbjct: 3 PTAPSPASVRAAASPRCCSRS 23
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 253 IAMDGTEGLVRGQPVHDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 396
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 328 RGYGWVNQSHVRVVRALNPRYRPWQWFGPYFHPSAARPPIRDEGSDFVPR 179
RG+G+V S V V A ++ + G ++ PP R++ S PR
Sbjct: 127 RGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQRAPR 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,007,723
Number of Sequences: 37544
Number of extensions: 660536
Number of successful extensions: 1800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4942498008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -