Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E11_e373_09.seq
(1535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 269 5e-72
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 134 1e-31
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-09
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 38 0.021
SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 269 bits (659), Expect = 5e-72
Identities = 141/221 (63%), Positives = 159/221 (71%), Gaps = 3/221 (1%)
Frame = +1
Query: 136 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSP 315
DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ D+G P
Sbjct: 85 DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144
Query: 316 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 495
I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVD
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVD 204
Query: 496 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 675
LLAPYA TVLIMELINNVAKAHGGYSVFAGVG + D+ M
Sbjct: 205 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM-GTMQ 263
Query: 676 ESGVISLKDKTSKVALVY---GQMNEPPGARARVALTGLTV 789
E + K + V +Y + +P A L TV
Sbjct: 264 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTV 304
Score = 37.1 bits (82), Expect = 0.037
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 927 STDMGTMXERITXSXKGXITFVQA 998
+TDMGTM ERIT + KG IT VQA
Sbjct: 256 ATDMGTMQERITTTKKGSITSVQA 279
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 1001 YVPADDLTDPA-RXXIXXLDAPQVXS 1075
YVPADDLTDPA LDA V S
Sbjct: 281 YVPADDLTDPAPATTFAHLDATTVLS 306
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 134 bits (325), Expect = 1e-31
Identities = 74/133 (55%), Positives = 83/133 (62%), Gaps = 21/133 (15%)
Frame = +1
Query: 466 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 645
+L TGIKV+DL+ PYA TVLI ELINN+AK HGG SVFAGVGERTR
Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61
Query: 646 EGNDLYHEMIESGVISLKD---------------------KTSKVALVYGQMNEPPGARA 762
EGNDL EM+ESG+I D K SK V+GQMNEPPGARA
Sbjct: 62 EGNDLLREMLESGIIKYGDDFMHSMEEGGWDLSKVDKAGMKESKATFVFGQMNEPPGARA 121
Query: 763 RVALTGLTVAEYF 801
RVAL+GLT+AEYF
Sbjct: 122 RVALSGLTIAEYF 134
Score = 75.8 bits (178), Expect = 9e-14
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +2
Query: 806 DQEGQDVLLFIDNIFRFTQAGSEXSALLGRIPSAXVTSP-L*H*HGYYAXKNYXFXEGXH 982
+ +G+DVL F+DNIFRFTQAGSE SALLGR+PSA P L G + +G
Sbjct: 140 EAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTKKGSI 199
Query: 983 YFCTSYYVPADDLTDPA-RXXIXXLDAPQVXS 1075
+ YVPADDLTDPA LDA V S
Sbjct: 200 TSVQAVYVPADDLTDPAPATTFAHLDATTVLS 231
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 61.7 bits (143), Expect = 2e-09
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +1
Query: 253 IAMDGTEGLVR-GQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 429
+ + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + +
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70
Query: 430 APEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 609
AP + + +E ++TGIK VD L P T + ++ I N + + G
Sbjct: 71 APGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDG 130
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 37.9 bits (84), Expect = 0.021
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +1
Query: 469 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 648
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 85 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKF---SNSDVIIYVGCGERGNE 141
Query: 649 GNDLYHEMIESGVI---SLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYF 801
+++ + E V ++ + ALV N P AR TG+T++EYF
Sbjct: 142 MSEVLRDFPELTVEINGQVESIMKRTALVANTSNMPVAAREASIYTGITLSEYF 195
>SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 476 VTRISCCTDMSTNSGASAWMAAVLSVGIGPRSSIGSPMTLMIRPRVSAPTGIR 318
+ R C S++ W + L V I P +G TL I PR P G R
Sbjct: 45 IRRAQSCVLRSSSPATVVWPSEFLEVEIQPE--LGEDCTLAIEPRTDIPVGKR 95
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.5 bits (63), Expect = 7.5
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -1
Query: 437 SGASAWMAAVLSVGIGPRSSIGSPMTLMIRPRVSAPTGIRMGEPESCTGCPRTKPSVPSM 258
SG+S+ A +L GP SS+ P T P PTG+ M P S P P P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725
Query: 257 AMVRTVFSP 231
SP
Sbjct: 726 GTHPQQVSP 734
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 286 GQPVHDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 393
GQP +D+G P G + G+++N GEP++ GP
Sbjct: 94 GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,814,898
Number of Sequences: 59808
Number of extensions: 735607
Number of successful extensions: 3591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3585
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5000293002
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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