Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E11_e373_09.seq
(1535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 364 e-101
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 64 2e-10
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 64 2e-10
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 44 3e-04
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 44 4e-04
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 41 0.003
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 36 0.10
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 29 8.8
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 29 8.8
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 364 bits (896), Expect = e-101
Identities = 178/222 (80%), Positives = 190/222 (85%)
Frame = +1
Query: 136 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSP 315
DVQF++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140
Query: 316 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 495
I+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVD
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVD 200
Query: 496 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 675
LLAPYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI
Sbjct: 201 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 260
Query: 676 ESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYF 801
E GVI LK K SKV+LVYGQMNEPPGARARV LTGLTVAEYF
Sbjct: 261 EGGVIDLKGKNSKVSLVYGQMNEPPGARARVCLTGLTVAEYF 302
Score = 90.2 bits (214), Expect = 3e-18
Identities = 55/94 (58%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +2
Query: 800 FRDQEGQDVLLFIDNIFRFTQAGSEXSALLGRIPSAXVTSP-L*H*HGYYAXKNYXFXEG 976
FRDQEGQDVLLFIDNIFRFTQAGSE SALLGRIPSA P L G + +G
Sbjct: 302 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKKG 361
Query: 977 XHYFCTSYYVPADDLTDPA-RXXIXXLDAPQVXS 1075
+ YVPADDLTDPA LDA V S
Sbjct: 362 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 395
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 64.5 bits (150), Expect = 2e-10
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +1
Query: 217 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 396
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 397 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 507
+ + + +AP + +E +VTG+K VD L P
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 159
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 64.5 bits (150), Expect = 2e-10
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +1
Query: 217 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 396
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 397 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 507
+ + + +AP + +E +VTG+K VD L P
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 186
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 44.0 bits (99), Expect = 3e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 361 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 507
V+G PID +GPI + + + +AP + +E +VTG+K VD L P
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 151
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 229 LGENTVRTIAMDGTEGLVRGQPVHD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 405
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 406 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 501
I+ + +E++ TGI +D++
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVM 162
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 DGTEGL-VRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 438
+GT G+ + +G R PV + LGRI N G+PID+ P+ + I+ +
Sbjct: 94 EGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPIN 153
Query: 439 FVDMSVQQEILVTGIKVVDLL 501
+ +E++ TGI +D++
Sbjct: 154 PFNRIYPEEMIQTGISAIDVM 174
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 35.5 bits (78), Expect = 0.10
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Frame = +1
Query: 469 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 648
L+ G +V+D L P TV+ L ++ ++ G GER E
Sbjct: 216 LLCGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNE 272
Query: 649 GNDLYHEMIESGVISLKDKTS---KVALVYGQMNEPPGARARVALTGLTVAEYF 801
+++ + E + TS + ALV N P AR TG+T+AEYF
Sbjct: 273 MSEVLRDFPELTMEVEGVTTSIMKRTALVANTSNMPVAAREASIYTGITLAEYF 326
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 268 TEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDE 384
T G+ G PV +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 579 QLHNKYGFTNAGATEQTDLASFSIGCEQIHDFD 481
Q+ KYG+T A TE + S IG DFD
Sbjct: 135 QIKKKYGYTGAPVTEDGRVGSKLIGMVTSRDFD 167
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 579 QLHNKYGFTNAGATEQTDLASFSIGCEQIHDFD 481
Q+ KYG+T A TE + S IG DFD
Sbjct: 135 QIKKKYGYTGAPVTEDGRVGSKLIGMVTSRDFD 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,564,318
Number of Sequences: 27780
Number of extensions: 527355
Number of successful extensions: 1296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4421410548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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