Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E11_e373_09.seq
         (1535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   5.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 599 PMVVTLYLQEWVNAPVKVMICTM 667
           PMV+  Y + WV  P+   I  M
Sbjct: 108 PMVINCYYETWVLGPLFCQIYAM 130


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 599 PMVVTLYLQEWVNAPVKVMICTM 667
           PMV+  Y + WV  P+   I  M
Sbjct: 74  PMVINCYYETWVLGPLFCQIYAM 96


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = -1

Query: 1091 PXQQXPXQPGXHPXKXXXXEPDQSNHQQ 1008
            P QQ       HP      +P Q   QQ
Sbjct: 810  PHQQLHHHQSTHPQAQAQAQPQQQQQQQ 837


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,422
Number of Sequences: 438
Number of extensions: 6845
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53831250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)