Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E10_e365_10.seq
         (1547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    38   0.003
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.009
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.009
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    36   0.015

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +3

Query: 132 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMK--DKS 296
           ++K +   +PKRP SAY L+  + R +IK E  G K   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 297 IWXXXXXXXXXQYAKDLESYNAN 365
            +          Y +++ +YNA+
Sbjct: 167 TYEEEASKLREAYEEEMAAYNAS 189


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 126 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 281
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 126 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 281
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 132 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 284
           RKK+  T  PKR MSA+M +    RE++K+++P     ++    G+ WK +
Sbjct: 9   RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,448,441
Number of Sequences: 5004
Number of extensions: 75436
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)